Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0875
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915...    26   8.0  

>09_04_0484 +
           17990020-17990488,17990930-17991009,17991122-17991586,
           17994670-17994756,17994887-17995018,17995102-17995293,
           17995409-17995495,17995621-17996295
          Length = 728

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 159 VLKGLEINENFCTRRLHYTKVAKLKLVIYLTI*YKII 269
           V+ G EI  N+   +L Y+K A L ++I + + Y+++
Sbjct: 655 VITGEEILTNYWQVQLGYSKWADLAILIGMVVLYRVL 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,839,034
Number of Sequences: 37544
Number of extensions: 52362
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)