Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0875
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    26   7.4  
L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical pr...    25   9.7  
L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 283 YKSLFIILYYIVRYITSFNLATLV*C 206
           Y  L   ++Y+V  +TSF+L+ L+ C
Sbjct: 169 YVYLLSPIFYVVMILTSFSLSALIYC 194


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 283 YKSLFIILYYIVRYITSFNLATLV*C 206
           Y  L   ++Y+V  +TSF+L+ L+ C
Sbjct: 169 YVYLLSPIFYVVMILTSFSLSALIYC 194


>L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical
           protein F44E2.7a protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 303 VRVRPNSTNHYLLFY 259
           VRV P++ NHYL +Y
Sbjct: 16  VRVDPSTLNHYLCYY 30


>L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical
           protein F44E2.7d protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 303 VRVRPNSTNHYLLFY 259
           VRV P++ NHYL +Y
Sbjct: 16  VRVDPSTLNHYLCYY 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,693,986
Number of Sequences: 27780
Number of extensions: 59184
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)