Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0875
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   6.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   6.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 122 VHTYTVLNTLLR 157
           VHT TV N LLR
Sbjct: 132 VHTITVPNKLLR 143


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 321 WMQLVQVRVRPNSTNHYLLFYI 256
           W Q+       N+TN Y  +YI
Sbjct: 129 WFQMSINNTNNNNTNKYKDYYI 150


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 VVHTYTVLNTLLRGAKRTRNKRK 187
           V  T T +  LLR A+  RN+R+
Sbjct: 160 VTPTPTTVQQLLRRAQIRRNERR 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,721
Number of Sequences: 438
Number of extensions: 813
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)