Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0874
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   2.4  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   3.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   9.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -1

Query: 460 ECRPINRMGTGYGRAFGAHCAVPWVSW 380
           E  P  R+    GR F A+C     SW
Sbjct: 293 ESNPSERVMRELGRIFRAYCRENHASW 319


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
          peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 4  SYKFYSTESFTLL 42
          S+ FY TE FT+L
Sbjct: 41 SFYFYKTEQFTVL 53


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 232 GGAGVRHNPVRYPPRPGIRKWIP 164
           GG  V+ +P    P  G+R+ IP
Sbjct: 39  GGGAVQPDPGSCDPSVGLRQGIP 61



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +3

Query: 354 PHRAPPLRLHETHGTAQCAPKARPYPVPI 440
           PH+ PP++     G       A   P P+
Sbjct: 204 PHQQPPIQQQPNQGQQPPGNTAAALPSPL 232


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +3

Query: 354 PHRAPPLRLHETHGTAQCAPKARPYPVPI 440
           PH+ PP++     G       A   P P+
Sbjct: 206 PHQQPPIQQQPNQGQQPPGNTAAALPSPL 234


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 420 RPYPVPILL 446
           RPYPVP  L
Sbjct: 309 RPYPVPFAL 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,972
Number of Sequences: 336
Number of extensions: 1609
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)