BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0874 (463 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.35 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2 SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 3.2 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 3.2 SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 4.3 SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 5.6 SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 7.4 SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.8 SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 24 9.8 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 29.1 bits (62), Expect = 0.35 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +3 Query: 300 PLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPV 434 P+ S+ P ER+P+ APP ++GT P + P P+ Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPI 275 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 25.8 bits (54), Expect = 3.2 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 258 SFFSPSSSQEAPESDITRSVTPLDRVSVN 172 SFFSP+SS+ P S T S + LD SV+ Sbjct: 119 SFFSPTSSEYTPSS--TESSSLLDPSSVS 145 >SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1044 Score = 25.8 bits (54), Expect = 3.2 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +3 Query: 378 LHETHGTAQCAPKARPYPVPILLIG 452 LH H + AP + P+P P +++G Sbjct: 182 LHNAHPSIHDAPYSSPFPPPRIVLG 206 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 25.8 bits (54), Expect = 3.2 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 280 QFLTGDYPLKKAREALAPQNDYRLNPIEP 366 + +TGDY ++ + L +Y +N IEP Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607 >SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 25.4 bits (53), Expect = 4.3 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -1 Query: 388 VSWSRSGGARWGLVGSRSAGQ 326 ++W+ G RW L GS +G+ Sbjct: 283 INWTIREGERWALTGSNGSGK 303 >SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 25.0 bits (52), Expect = 5.6 Identities = 12/38 (31%), Positives = 15/38 (39%) Frame = +3 Query: 327 CPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVPI 440 CP L+ H+ HG C+P P P PI Sbjct: 352 CPVPNCDKAYKNQNGLKYHKLHG--HCSPITTPTPAPI 387 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 24.6 bits (51), Expect = 7.4 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +1 Query: 295 DYPLKKAREALAPQNDYRLN----PIEPHHSDSTKPTVPHS 405 DYPL+ + + L+ +ND ++ P+ ++S+ P+S Sbjct: 5 DYPLRSSMDELSTKNDNEIDLEKGPLPEYNSEDGSTLPPYS 45 >SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1379 Score = 24.2 bits (50), Expect = 9.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 264 LVSFFSPSSSQEAPESDITRSVTPLDRVSVN 172 L ++F ++ E+P+SD S TP S N Sbjct: 783 LENYFGHNAEDESPQSDEVESQTPPSGYSEN 813 >SPBC947.01 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 24.2 bits (50), Expect = 9.8 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +3 Query: 330 PAERLPTKPHRAPPLR 377 P+ P+KP+R+PPL+ Sbjct: 166 PSYLAPSKPNRSPPLK 181 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,628,658 Number of Sequences: 5004 Number of extensions: 27508 Number of successful extensions: 76 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 76 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 174340060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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