Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0874
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.35 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   3.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   3.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   4.3  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   5.6  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   7.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 300 PLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPV 434
           P+     S+ P ER+P+    APP     ++GT    P + P P+
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPI 275


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 258 SFFSPSSSQEAPESDITRSVTPLDRVSVN 172
           SFFSP+SS+  P S  T S + LD  SV+
Sbjct: 119 SFFSPTSSEYTPSS--TESSSLLDPSSVS 145


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 378 LHETHGTAQCAPKARPYPVPILLIG 452
           LH  H +   AP + P+P P +++G
Sbjct: 182 LHNAHPSIHDAPYSSPFPPPRIVLG 206


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 280 QFLTGDYPLKKAREALAPQNDYRLNPIEP 366
           + +TGDY  ++  + L    +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 388 VSWSRSGGARWGLVGSRSAGQ 326
           ++W+   G RW L GS  +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +3

Query: 327 CPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVPI 440
           CP             L+ H+ HG   C+P   P P PI
Sbjct: 352 CPVPNCDKAYKNQNGLKYHKLHG--HCSPITTPTPAPI 387


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 295 DYPLKKAREALAPQNDYRLN----PIEPHHSDSTKPTVPHS 405
           DYPL+ + + L+ +ND  ++    P+  ++S+      P+S
Sbjct: 5   DYPLRSSMDELSTKNDNEIDLEKGPLPEYNSEDGSTLPPYS 45


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 264 LVSFFSPSSSQEAPESDITRSVTPLDRVSVN 172
           L ++F  ++  E+P+SD   S TP    S N
Sbjct: 783 LENYFGHNAEDESPQSDEVESQTPPSGYSEN 813


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 330 PAERLPTKPHRAPPLR 377
           P+   P+KP+R+PPL+
Sbjct: 166 PSYLAPSKPNRSPPLK 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,658
Number of Sequences: 5004
Number of extensions: 27508
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)