BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0874 (463 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 30 1.0 07_03_1425 + 26489446-26491425 28 3.2 03_06_0713 - 35687672-35689219 28 3.2 03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 28 4.2 02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 28 4.2 02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 4.2 10_08_0611 - 19213994-19214053,19214776-19215732 27 5.6 06_03_1356 - 29536027-29537379 27 5.6 02_05_0202 + 26708049-26709074 27 5.6 >01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160, 29302201-29302372,29302488-29302628,29302707-29303055, 29303133-29305477 Length = 1101 Score = 29.9 bits (64), Expect = 1.0 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +2 Query: 260 TRSFTSPNFSQETTP*KRRAKHL 328 T +F SP ++ ETTP K++A+HL Sbjct: 387 TGAFESPAYTHETTPRKQQAEHL 409 >07_03_1425 + 26489446-26491425 Length = 659 Score = 28.3 bits (60), Expect = 3.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 412 GAHCAVPWVSWSRSGGARWGLVGSRSAGQVLR 317 G HC P + R GG RW V +R G+ R Sbjct: 241 GLHCFTP-AAVGRGGGGRWIAVATRRKGRAQR 271 >03_06_0713 - 35687672-35689219 Length = 515 Score = 28.3 bits (60), Expect = 3.2 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +3 Query: 282 ISHRRLPLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYP 431 +SH +++ RST PA R R PP R H H A +A P P Sbjct: 7 VSHTTCAIQRRRRSTAPARR------RGPPSRRH-PHSGAALTLRAAPPP 49 >03_05_0741 + 27287414-27287479,27287887-27287946,27288949-27289112, 27289158-27289241,27290115-27290178,27291181-27291334, 27291605-27291675,27292138-27292242,27292734-27292826, 27293672-27293746,27294114-27294199,27294293-27294499, 27294585-27294684,27294765-27294835,27294960-27295041, 27295920-27296078,27296480-27296533,27296775-27296817, 27297630-27297712,27298569-27298631,27298720-27298794, 27299620-27299745,27300267-27300499,27300611-27300655, 27300953-27301019,27302095-27302166,27302276-27302520, 27302598-27302655,27302743-27302910,27303224-27303298, 27303412-27303669 Length = 1101 Score = 27.9 bits (59), Expect = 4.2 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 283 FLTGDYPLKKAREALAPQNDYRLNPIEPHH 372 F + +PLKKA A + + +N +EP H Sbjct: 107 FYSSGFPLKKAEAYAALRRPFLVNELEPQH 136 >02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098, 10908416-10908721,10909347-10909561,10909656-10909950, 10910493-10910597,10911112-10911180,10911433-10911519, 10911953-10913704,10914964-10915054,10915217-10915488 Length = 1198 Score = 27.9 bits (59), Expect = 4.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 458 VPSY*QDGYRIRASLRRALCGTVG 387 VP+ +RIR +R A+CGTVG Sbjct: 555 VPTLRNLNFRIRQGMRVAICGTVG 578 >02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337, 10880426-10880731,10881098-10881312,10881417-10881711, 10882193-10882357,10882477-10882527,10882657-10883109, 10883195-10883281,10883736-10884800,10884858-10885376 Length = 1186 Score = 27.9 bits (59), Expect = 4.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 458 VPSY*QDGYRIRASLRRALCGTVG 387 VP+ +RIR +R A+CGTVG Sbjct: 378 VPTLRNLNFRIRQGMRVAICGTVG 401 >10_08_0611 - 19213994-19214053,19214776-19215732 Length = 338 Score = 27.5 bits (58), Expect = 5.6 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 418 AFGAHCAVPWVSWSRSGGARWGLVGSRSA 332 AF +PW+SW+ + G LV +R+A Sbjct: 217 AFNIGDFIPWLSWADTNGINARLVAARTA 245 >06_03_1356 - 29536027-29537379 Length = 450 Score = 27.5 bits (58), Expect = 5.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 163 GESIYGYPVEGGNGP 207 GE++YG P +GG GP Sbjct: 390 GEAVYGGPAKGGEGP 404 >02_05_0202 + 26708049-26709074 Length = 341 Score = 27.5 bits (58), Expect = 5.6 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = +3 Query: 309 KGARSTC--PAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVP 437 +G R C P P +PH PPL H+ G KA P+ P Sbjct: 222 RGGRGGCCAPPVAPPPQPHPQPPLPEHDA-GEEDMDGKAPPHECP 265 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,158,491 Number of Sequences: 37544 Number of extensions: 207492 Number of successful extensions: 772 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 772 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 919380308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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