Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0874
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 30 1.0
07_03_1425 + 26489446-26491425 28 3.2
03_06_0713 - 35687672-35689219 28 3.2
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 28 4.2
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 28 4.2
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 4.2
10_08_0611 - 19213994-19214053,19214776-19215732 27 5.6
06_03_1356 - 29536027-29537379 27 5.6
02_05_0202 + 26708049-26709074 27 5.6
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 260 TRSFTSPNFSQETTP*KRRAKHL 328
T +F SP ++ ETTP K++A+HL
Sbjct: 387 TGAFESPAYTHETTPRKQQAEHL 409
>07_03_1425 + 26489446-26491425
Length = 659
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 412 GAHCAVPWVSWSRSGGARWGLVGSRSAGQVLR 317
G HC P + R GG RW V +R G+ R
Sbjct: 241 GLHCFTP-AAVGRGGGGRWIAVATRRKGRAQR 271
>03_06_0713 - 35687672-35689219
Length = 515
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 282 ISHRRLPLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYP 431
+SH +++ RST PA R R PP R H H A +A P P
Sbjct: 7 VSHTTCAIQRRRRSTAPARR------RGPPSRRH-PHSGAALTLRAAPPP 49
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 283 FLTGDYPLKKAREALAPQNDYRLNPIEPHH 372
F + +PLKKA A + + +N +EP H
Sbjct: 107 FYSSGFPLKKAEAYAALRRPFLVNELEPQH 136
>02_02_0492 -
10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 458 VPSY*QDGYRIRASLRRALCGTVG 387
VP+ +RIR +R A+CGTVG
Sbjct: 555 VPTLRNLNFRIRQGMRVAICGTVG 578
>02_02_0490 -
10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 458 VPSY*QDGYRIRASLRRALCGTVG 387
VP+ +RIR +R A+CGTVG
Sbjct: 378 VPTLRNLNFRIRQGMRVAICGTVG 401
>10_08_0611 - 19213994-19214053,19214776-19215732
Length = 338
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 418 AFGAHCAVPWVSWSRSGGARWGLVGSRSA 332
AF +PW+SW+ + G LV +R+A
Sbjct: 217 AFNIGDFIPWLSWADTNGINARLVAARTA 245
>06_03_1356 - 29536027-29537379
Length = 450
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 163 GESIYGYPVEGGNGP 207
GE++YG P +GG GP
Sbjct: 390 GEAVYGGPAKGGEGP 404
>02_05_0202 + 26708049-26709074
Length = 341
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 309 KGARSTC--PAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVP 437
+G R C P P +PH PPL H+ G KA P+ P
Sbjct: 222 RGGRGGCCAPPVAPPPQPHPQPPLPEHDA-GEEDMDGKAPPHECP 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,491
Number of Sequences: 37544
Number of extensions: 207492
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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