Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0874
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078) 31 0.46
SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 28 4.3
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 27 5.7
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 27 7.6
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3) 27 7.6
SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57) 27 7.6
SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9) 27 10.0
>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
Length = 788
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 265 VLHLPQFLTG---DYPLKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHS 405
+ +P FL+ DY LKKA++A +D L+PI + + T HS
Sbjct: 412 IFEIPNFLSDEECDYILKKAKKAGMHSSDIHLDPITDKYKKMIRSTEGHS 461
>SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 274 LPQFLTGDYPLKKAREALAPQNDYRLNPIEPHHSD--STKPTVPHSARR 414
L + LTG+ + E AP+++ LNPI P+ + +T PTVP ++R
Sbjct: 280 LNEVLTGE----TSAEPAAPEDEDYLNPIAPNSNKHLATMPTVPRRSQR 324
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 331 PQNDYRLNPIEPHHSDSTKPTVPHSARR 414
P N + NP PH+ + P PH++R+
Sbjct: 313 PLNGRKSNPNPPHNGRKSNPNPPHNSRK 340
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 300 PLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVP 437
P E+ + PAER + P R PP LH P P+P
Sbjct: 1568 PAERRTPTPVPAERRVSPPSRLPPPSLHIRPSDRPGMTATPPPPLP 1613
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 282 ISHRRLPLEKGARSTC--PAERLPT-KPHRAPPLRLHETHGTAQCAPKARPYPVPI 440
+ HR PL+ +S PA + P +P P + + AP + P PVP+
Sbjct: 849 LQHRNSPLQARQKSAFQPPAAQQPAFQPPSPQPTQFYNPASYQPSAPSSMPAPVPL 904
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 442 RMGTGYGRAFGAHCAVPWVSWSRSGGARWGLVGSRSAGQVLRAPFSR 302
+ G GYG+ FG H P+ R G + G + GQ R P+ +
Sbjct: 43 QFGQGYGQQFGQHQRQPY-GQQRYGQQQRQPYGQQRYGQQQRQPYGQ 88
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 333 AERLPTKPHRAPPL-RLHETHGTAQCAPKAR 422
A + T P R PPL RLH+T +A CA R
Sbjct: 143 ARTVQTSPDRQPPLYRLHQT-DSAHCADYTR 172
>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
Length = 1281
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 330 PAERLPTKPHR--APPLRLHETHGTAQCAPKARPYPVPILL 446
P +PT R A PLRL E HG +C + P +L
Sbjct: 343 PVPIIPTALARNLAGPLRLSEVHGVPKCGLSVTSFQNPCVL 383
>SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57)
Length = 969
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 360 RAPPLRLHETHGTAQCAPKARPYPVPILLIGRH 458
R P ++ T GT AP ARP P+P L H
Sbjct: 787 RTPAVKQRATEGTDDVAPPARP-PLPPLPHSNH 818
>SB_58957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 388 VSWSRSGGARWGLVGSRSAGQVLRAPFS 305
+ W +SG AR GL G R +L AP S
Sbjct: 383 MDWVKSGSARKGLWGVRDRKTILCAPRS 410
>SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 333 AERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVPILLIGRH 458
A+ L T+ H+ + L H AQ R ILL GRH
Sbjct: 415 AQTLLTRRHKKAQILLTRRHKKAQILLTGRHKKAQILLTGRH 456
>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 370 HSDSTKPTVPHSARRRLARIRY 435
+ D K +V HS+R R+ R+RY
Sbjct: 87 YKDGKKMSVSHSSRMRIKRLRY 108
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 307 KKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLARIRYPS 441
++ R + +P+ R PHH + S RRR +R R P+
Sbjct: 232 RRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPT 276
>SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 333 AERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVPILLIGRH 458
A+ L T+ H+ + L H AQ R ILL GRH
Sbjct: 270 AQTLLTRRHKKAQILLTRRHKKAQILLTGRHKKAQILLTGRH 311
>SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9)
Length = 416
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 333 AERLPTKPHRAPPLRLHETHGTAQCAPKARPYPVPILLIGRH 458
A+ L T+ H+ + L H AQ R ILL GRH
Sbjct: 17 AQTLLTRRHKKAQILLTRRHKKAQILLTGRHKKAQILLTGRH 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,812
Number of Sequences: 59808
Number of extensions: 217370
Number of successful extensions: 951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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