Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0874
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lecti...    31   0.40 
AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lecti...    31   0.40 
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    27   6.5  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    27   6.5  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lectin
           protein 82, isoform b protein.
          Length = 430

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 259 DEVLHLPQFLTGDYPLKKAREALAPQNDYRLNPIEPHHSDS 381
           D +LHLP FLT  YPL  A   ++  N   L P+     DS
Sbjct: 301 DFILHLPMFLT-PYPLYCANPKVSGTNSTELPPLSVSSEDS 340


>AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lectin
           protein 82, isoform a protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 259 DEVLHLPQFLTGDYPLKKAREALAPQNDYRLNPIEPHHSDS 381
           D +LHLP FLT  YPL  A   ++  N   L P+     DS
Sbjct: 335 DFILHLPMFLT-PYPLYCANPKVSGTNSTELPPLSVSSEDS 374


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 282 ISHRRLPLEKGARSTCPAE-RLPTKPHRAPPLRLHETHGTAQCAPKARPYPVP 437
           I  R+  +E+   +  P   RLP KP  A  + +H    +   AP   P P P
Sbjct: 745 IQRRKKHVERADSAGAPGSPRLPPKPSVAQTIAMHSAPPSPLTAPIPPPPPPP 797


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 282 ISHRRLPLEKGARSTCPAE-RLPTKPHRAPPLRLHETHGTAQCAPKARPYPVP 437
           I  R+  +E+   +  P   RLP KP  A  + +H    +   AP   P P P
Sbjct: 644 IQRRKKHVERADSAGAPGSPRLPPKPSVAQTIAMHSAPPSPLTAPIPPPPPPP 696


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 354 PHRAPPLRLHET-HGTAQCAPKARPYPVPILLIGRHS 461
           PH   P +L++   G A C P A P P  I  I +H+
Sbjct: 173 PHPPVPQQLNQRGSGQAMCVPVAAPLPAIINPITQHN 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,089
Number of Sequences: 27780
Number of extensions: 157695
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)