BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0874 (463 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g09680.1 68417.m01590 expressed protein 28 2.7 At3g03930.1 68416.m00409 protein kinase-related similar to serin... 27 8.2 At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil... 27 8.2 >At4g09680.1 68417.m01590 expressed protein Length = 1075 Score = 28.3 bits (60), Expect = 2.7 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +3 Query: 363 APPLRLHETHGTAQCAPKARPYP-VPILLIG 452 +PPL THG A C PK P VP +L G Sbjct: 826 SPPLE-KPTHGAALCLPKITPQEFVPCILAG 855 >At3g03930.1 68416.m00409 protein kinase-related similar to serine/threonine protein kinase [Chlamydomonas reinhardtii] GI:18139937 Length = 287 Score = 26.6 bits (56), Expect = 8.2 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -1 Query: 373 SGGARWGLVGSRSAG---QVLRAPF 308 +GG+RWG+V SR++G QV+ F Sbjct: 188 TGGSRWGVVMSRNSGFSEQVMEVDF 212 >At1g48620.1 68414.m05439 histone H1/H5 family protein weak similarity to HMG I/Y like protein [Glycine max] GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum] GI:20502966; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF02178: AT hook motif Length = 479 Score = 26.6 bits (56), Expect = 8.2 Identities = 12/40 (30%), Positives = 17/40 (42%) Frame = +1 Query: 283 FLTGDYPLKKAREALAPQNDYRLNPIEPHHSDSTKPTVPH 402 F + ++P A+AP N+ L P T P PH Sbjct: 31 FASPNHPFFTGPTAVAPPNNIHLYQAAPPQQPQTSPVPPH 70 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,594,586 Number of Sequences: 28952 Number of extensions: 149820 Number of successful extensions: 500 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 500 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 772134480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -