Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0874
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09680.1 68417.m01590 expressed protein                             28   2.7  
At3g03930.1 68416.m00409 protein kinase-related similar to serin...    27   8.2  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    27   8.2  

>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 363 APPLRLHETHGTAQCAPKARPYP-VPILLIG 452
           +PPL    THG A C PK  P   VP +L G
Sbjct: 826 SPPLE-KPTHGAALCLPKITPQEFVPCILAG 855


>At3g03930.1 68416.m00409 protein kinase-related similar to
           serine/threonine protein kinase [Chlamydomonas
           reinhardtii] GI:18139937
          Length = 287

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 373 SGGARWGLVGSRSAG---QVLRAPF 308
           +GG+RWG+V SR++G   QV+   F
Sbjct: 188 TGGSRWGVVMSRNSGFSEQVMEVDF 212


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 283 FLTGDYPLKKAREALAPQNDYRLNPIEPHHSDSTKPTVPH 402
           F + ++P      A+AP N+  L    P     T P  PH
Sbjct: 31  FASPNHPFFTGPTAVAPPNNIHLYQAAPPQQPQTSPVPPH 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,594,586
Number of Sequences: 28952
Number of extensions: 149820
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)