Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   1.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   4.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.8  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   5.8  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    25   7.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   7.7  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.7  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.7  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 243 RILSKTSNYTKYDQLGILFDKLEST 317
           ++L    NY  ++QL +L D+LES+
Sbjct: 139 QLLDLVQNYPTFNQLNVLHDRLESS 163


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 466 SSPCIFANGILNAGRSGCS 410
           S  C+F NG    G SGC+
Sbjct: 386 SGTCVFENGAFQNGGSGCT 404


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 54  YDM*NNHNIAYESFTKIVQMQYSDL*FRKPRSYDKD 161
           Y   +NH I  +S   +++M  S +      SYDKD
Sbjct: 674 YPFNSNHTIDCDSLQNVIKMLESSIDEISSASYDKD 709


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 138 KPRSYDKDVSLDSHVDTAVFSNNRQSTSFS 227
           K R  DKD  L  H D    S+   ST F+
Sbjct: 526 KKRPSDKDNKLHIHYDDGAMSSTSYSTDFT 555


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  FRFYDM*NNHNIAYESFTKIVQMQY 119
           F+ YD+ NN  I+Y+   +IV   Y
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIY 129


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 135 RKPRSYDKDVSLDSHVDTAV--FSNNRQSTSFSSHK*G 242
           R+PR Y       SH D A   F  +R S S+SS   G
Sbjct: 152 RRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNG 189


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 183 DTAVFSNNRQSTSFSSHK*GRILSKTSNYTKYDQLGILFDKLESTYPDLA 332
           D A F     +T F++         TSN T YD +  +F+KL     D+A
Sbjct: 311 DNAGFVMGTSATLFNTFLLEWSQEVTSNSTLYDIIHKVFEKLSEDQNDIA 360


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 427 GRSGCSFCTSCVICSTSNFPTF 362
           G S   F  SC++C T+  PTF
Sbjct: 257 GLSWQQFIDSCLLCGTAISPTF 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,343
Number of Sequences: 5004
Number of extensions: 42338
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)