Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     29   1.9  
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465...    29   1.9  
11_06_0119 + 20321687-20323624                                         28   4.4  
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907...    28   4.4  
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    27   5.8  
12_01_0730 + 6505759-6508806                                           27   7.6  
03_02_0881 + 12115757-12115915,12116008-12116135,12117630-121177...    27   7.6  

>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
 Frame = +3

Query: 192 VFSNNRQSTSFSSHK*GRILSKTSNYTKYDQLGILFDKLESTYP------------DLAK 335
           VF+ N    SFS    G I +  SN +K  ++    + L+ T P            DL+K
Sbjct: 671 VFNLNLSHNSFS----GPIPASLSNNSKLQKVDFSGNMLDGTIPVAISKLDALILLDLSK 726

Query: 336 VYSIGEFPSKVGKLLVLQITQDVQN 410
               GE PS++G L  LQI  D+ +
Sbjct: 727 NRLSGEIPSELGNLAQLQILLDLSS 751


>01_06_1120 -
           34645676-34645768,34645880-34645966,34646443-34646508,
           34647126-34647215,34647317-34647397,34647598-34647675,
           34647788-34647878,34647969-34648110,34648479-34648590
          Length = 279

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 300 DKLESTYPDLAKVYSIGEFPSKVGKLLVLQITQDVQNEHPERPAFKIPL 446
           D +  TYPD  K+Y +   P +V    V  ++QD+   H   PA  I +
Sbjct: 202 DNMAKTYPDRFKIYYVLNQPPEVWNGGVGFVSQDMIKAHLPAPAEDIQI 250


>11_06_0119 + 20321687-20323624
          Length = 645

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +3

Query: 180 VDTAVFSNNRQSTSFSSHK*GRILSKTSNYTKYDQ--LGILFDKLES-TYPDLAKVYSIG 350
           +D +  S    S SFS     R+     +Y  ++Q      F  L S TY DL      G
Sbjct: 219 LDLSGCSLTSASQSFSQLNLTRLEKLDLSYNNFNQPLASCWFWNLTSLTYLDLIMNILPG 278

Query: 351 EFPSKVGKLLVLQITQDVQNEH 416
           +FP  +G +  LQ+ +   N H
Sbjct: 279 QFPDSLGDMKALQVFRFSSNGH 300


>05_07_0340 +
           29389314-29389627,29389966-29390112,29390654-29390789,
           29391098-29391199,29391801-29391920,29392033-29392113,
           29392578-29392918,29393069-29393314,29394195-29394519,
           29395123-29395356,29395437-29395691
          Length = 766

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 229 VTNEDESFLRHQIIRNTTNLVFYLTNSKAPIRIWRKYIRLGNSR 360
           + N  + +LRHQ++ N   L   L   K  ++ W  Y +L   R
Sbjct: 222 LVNHPDHYLRHQVVYNANKLA-DLVEKKKKLQNWLDYYQLKYER 264


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 297 FDKLESTYPDLAKVYSIGEFPSKVGK 374
           FD+ +  YPDL K Y I +F   + K
Sbjct: 137 FDRKQYFYPDLPKGYQISQFDIPIAK 162


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 249 LSKTSNYTKYDQLGIL--FDKL-ESTYPDLAKVYSIGEFPSKVGKL 377
           L+ +SN     QL ++  F++L E  Y DL+     GE P+ +G+L
Sbjct: 123 LNLSSNNFSMSQLPVITGFERLTELVYLDLSDTNIAGELPASIGRL 168


>03_02_0881 +
           12115757-12115915,12116008-12116135,12117630-12117780,
           12117888-12118091,12118583-12119007,12119100-12119292,
           12119439-12119534,12119670-12119825,12119927-12120091
          Length = 558

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +3

Query: 78  IAYESFTKIVQMQYSDL*FRKPRSYDKDVSLDSHVDTAVFSNNRQSTSFSSHK*GRILSK 257
           + YESF K  ++++  + +     YD ++ L SH   A     R S  + +   G     
Sbjct: 296 LEYESFDKFDRVRFPKIRYAGMLQYDGELKLPSHFLVAPPEIERTSGEYLARN-GIRTYA 354

Query: 258 TSNYTKYDQLGILFDKLESTY--PDLAKVYSIGEFPSKVG 371
            S   K+  +   ++   S Y  P+L K Y   E PS +G
Sbjct: 355 CSETVKFGHVTFFWNGNRSGYFHPNLEK-YE--EIPSDIG 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,886
Number of Sequences: 37544
Number of extensions: 244943
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)