Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               45   4e-05
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   6e-05
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               42   2e-04
SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               40   0.001
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)               31   0.48 
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            29   2.6  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22891| Best HMM Match : Ank (HMM E-Value=0)                         28   4.5  
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)                    27   5.9  
SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)                     27   7.8  
SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   7.8  
SB_19351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +3

Query: 177 HVDTAVFSNNRQSTSFSSHK*GRILSKTSNYTKYDQLGILFDKLESTYPDLAKVYSIGEF 356
           H    +   N +S    S K  R LS    +  YD+      +L   +P++ ++YSIG+ 
Sbjct: 605 HSGVQIIIVNSRSVRTKSSK--RTLSDEFKHHNYDETLSFLKELHGQFPNITRLYSIGK- 661

Query: 357 PSKVGK-LLVLQITQDVQNEHPERPAFKIPLANMHGDE 467
            S  G+ L V+ ++       P +P FK  +ANMHG+E
Sbjct: 662 -SVEGRDLWVIALSSTPNKHEPGKPEFKY-IANMHGNE 697


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = +3

Query: 138 KPRSYDKDVSLDSHVDTAVFSNNRQSTSFSSHK*GRILS-KTSNYTKYDQLGILFDKLES 314
           K +   K+ + ++  ++   SN+ Q+ +F      +IL  +T  +  Y++L         
Sbjct: 25  KSKKIKKEENSENQEESKQTSNSTQNGNF------QILDVETFQHHNYEKLTWFLKYFSL 78

Query: 315 TYPDLAKVYSIGEFPSKVGKLLVLQITQDVQNEHPERPAFKIPLANMHGDE 467
            YPD+ ++YSIG +  +  KL  ++I+ +     P  P FK  +AN+HG+E
Sbjct: 79  KYPDITRLYSIG-YSVQNRKLWAMEISDNPGQHEPGEPEFKY-IANIHGNE 127


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +3

Query: 276 YDQLGILFDKLESTYPDLAKVYSIGEFPSKVGKLLVLQITQDVQNEHPERPAFKIPLANM 455
           Y+ +  L +K    YPD+ ++YS+G+       LLVL+I+          P FK  + NM
Sbjct: 36  YEAMKGLLEKFNKEYPDITRLYSVGKTVEN-RDLLVLEISDKPGKHEKGEPEFKY-IGNM 93

Query: 456 HGDE 467
           HG+E
Sbjct: 94  HGNE 97


>SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 879

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 267 YTKYDQLGILFDKLESTYPDLAKVYSIGEFPSKVGK-LLVLQITQDVQNEHPERPAFKIP 443
           Y  YD+L  L +     Y  +A+++S+G+  S + + L  LQIT       P  P FK  
Sbjct: 40  YHNYDELTRLLESYSKRYKKIARLHSVGK--SVLNRHLWALQITDHPDIIEPGEPMFKY- 96

Query: 444 LANMHGDES 470
           + NMHG+E+
Sbjct: 97  VGNMHGNEA 105


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 267 YTKYDQLGILFDKLESTYPDLAKVYSIGEFPSKVGK-LLVLQITQDVQNEHPERPAFKIP 443
           Y  YD+L  L +     Y  +A+++S+G+  S + + L  LQIT       P  P FK  
Sbjct: 40  YHNYDELTRLLESYSKRYKKIARLHSVGK--SVLNRHLWALQITDHPDIIEPGEPMFKY- 96

Query: 444 LANMHGDES 470
           + NMHG+E+
Sbjct: 97  VGNMHGNEA 105


>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
          Length = 837

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 135 RKPRSYDKDVSLDSHVDTAVFSNNRQSTS--FSSHK*GRILSKTSNYTKYDQLGILFDKL 308
           ++P++   D  L S  D     N   STS   SS    + L  T+N T  DQL  LFD  
Sbjct: 292 QEPKASTSD-QLSSLFDAQPLPNTTNSTSDQLSSLFDAQPLPNTTNSTTSDQLSSLFDAQ 350

Query: 309 ESTY 320
            STY
Sbjct: 351 PSTY 354


>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 189 AVFSNNRQSTSFSSHK*GRILSKTSNYTKYDQLGILFDKLESTYPDLAKVYSIGEFPSKV 368
           AVF+ N   TSF   K G + S  S+ +  ++L     K  ST  D    Y + +F   V
Sbjct: 150 AVFNVNEVETSFEELKSGLMSSGNSDMSSLEELKECVTKKPSTVTDKHVTYIVNKFLRSV 209

Query: 369 GK 374
            K
Sbjct: 210 IK 211


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 NEDESFLRHQIIRNTTNLVFYLTNSKAPIRIWRKY 339
           N D    RH++ R   N  F LTN +   R+W KY
Sbjct: 231 NRDGQIQRHELRRVVENFCFRLTNEQFD-RLWCKY 264


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 141 PRSYDKDVSLDSHVDTAVFSNNRQSTSFSSHK*GRILSKTSNYTKYDQLGILFDKLESTY 320
           P  + K   LDS+  T + ++ R S+  S    GR+++ T+  T  D  GI+++  ++ Y
Sbjct: 278 PPLFPKKSILDSNTTTEMLNSLRISSDSSIVTIGRLVNYTTGLTSKD-FGIIYNLTQNQY 336

Query: 321 PDLAK 335
             + K
Sbjct: 337 IAMEK 341


>SB_22891| Best HMM Match : Ank (HMM E-Value=0)
          Length = 429

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 139 SPVHTTKMYRWIRMLILLFSLTIAKAQVSAVTNEDESFLRHQIIRNTTNLVFYLTNSKAP 318
           +P+H    Y     + LL     +KAQV A++++  + L+  IIR  T+ +  L  S A 
Sbjct: 49  TPLHVASHYGRESFVKLLIE---SKAQVDALSDKGTTALQLAIIRERTSCIKVLLESSAN 105

Query: 319 IRI 327
           I +
Sbjct: 106 IDV 108



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 139 SPVHTTKMYRWIRMLILLFSLTIAKAQVSAVTNEDESFLRHQIIRNTTNLVFYLTNSKAP 318
           +P+H    Y     + LL     +KAQV A++++  + L+  IIR  T+ +  L  S A 
Sbjct: 225 TPLHVASHYGRESFVKLLIE---SKAQVDALSDKGTTALQLAIIRERTSCIKVLLESSAN 281

Query: 319 IRI 327
           I +
Sbjct: 282 IDV 284


>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
          Length = 1294

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 279 DQLGILFDKLESTYPDLAKVYSIGEFPSKVGKLLVLQI 392
           DQ+      L STY  L K+   GE P KVG+  ++ I
Sbjct: 667 DQVSRRTATLRSTYSRLGKIVKPGEQPRKVGESSLVTI 704


>SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)
          Length = 642

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 463 SPCIFANGILNAGRSGCSFCTSCVICSTSNFP 368
           S  + + G+  AG +  SFC  C+ICS    P
Sbjct: 421 SEAVLSTGV--AGTAYSSFCARCLICSAIEAP 450


>SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 132 IRDHCIAFALSS*TIHKLCYDCFTYRKSEIPKN*C 28
           +R HC+A  L + T  K  YD F   + ++  N C
Sbjct: 42  VRPHCVAAILRNITFTKNSYDSFIELQDKLHHNLC 76


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +1

Query: 178 MLILLFSLTIAKAQVSAVTNEDESFLRHQIIRNTTNLVFYLTNSKAPIR 324
           +++L+F   I + +   +  ++ + + +   + TTN+    TN+ AP R
Sbjct: 264 IVLLVFIFCICRLRKRQIKGKNSANIEYHCDKETTNITMETTNAHAPRR 312


>SB_19351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 457 CIFANGILNAGRSGCSFCTSCVIC 386
           C  ++G    GRSGC  C+  V C
Sbjct: 35  CGVSDGRRGVGRSGCEVCSGVVCC 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,758
Number of Sequences: 59808
Number of extensions: 303426
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)