Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    28   2.9  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        28   2.9  
Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z70284-11|CAA94281.1|  612|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
            T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66   NNHNIAYESFTKIV-QMQYSDL*FRKPRSYDKDVSLDSHVDTAVFSN 203
            N HN++YE+ TK++ +M +S+   R   + D  +S+   +   V+ N
Sbjct: 1302 NFHNVSYEAATKMLDEMDWSECIIRPSANKDSGLSVTWKICDRVYHN 1348


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
            protein T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66   NNHNIAYESFTKIV-QMQYSDL*FRKPRSYDKDVSLDSHVDTAVFSN 203
            N HN++YE+ TK++ +M +S+   R   + D  +S+   +   V+ N
Sbjct: 1302 NFHNVSYEAATKMLDEMDWSECIIRPSANKDSGLSVTWKICDRVYHN 1348


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66   NNHNIAYESFTKIV-QMQYSDL*FRKPRSYDKDVSLDSHVDTAVFSN 203
            N HN++YE+ TK++ +M +S+   R   + D  +S+   +   V+ N
Sbjct: 1302 NFHNVSYEAATKMLDEMDWSECIIRPSANKDSGLSVTWKICDRVYHN 1348


>Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical
           protein K07F5.13c protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 432 TLDVPGVHSARPALFVVPATFLPSTGIPQSNILSP 328
           TL    +    P  F  P+  LP T  PQS+ LSP
Sbjct: 140 TLGAGSLSGNTPTSFATPSA-LPGTNAPQSSFLSP 173


>Z70284-11|CAA94281.1|  612|Caenorhabditis elegans Hypothetical
           protein K07F5.13a protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 432 TLDVPGVHSARPALFVVPATFLPSTGIPQSNILSP 328
           TL    +    P  F  P+  LP T  PQS+ LSP
Sbjct: 113 TLGAGSLSGNTPTSFATPSA-LPGTNAPQSSFLSP 146


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 417 GVHSARPALFVVPATFLPSTGIPQS 343
           G   +RPALF  P   LPS  +P++
Sbjct: 554 GTGHSRPALFAPPRAQLPSQSVPKA 578


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 366 PSTGIPQSNILSPDP 322
           PS G PQSN LS DP
Sbjct: 374 PSEGTPQSNFLSNDP 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,516
Number of Sequences: 27780
Number of extensions: 237176
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)