Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 RILSKTSNYTKYDQLGILFDKLE 311
           R++ K  N T    LG+ F K+E
Sbjct: 494 RVVQKLVNTTVMRDLGVEFQKIE 516


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 116 LHLHYLRKRFISYVMIVLHIVKAKFQRTDVQLHFI 12
           LH    R+ F+ Y M  +  V   F   ++Q+  +
Sbjct: 131 LHYRSKRRGFVYYTMGQIREVARHFYHKELQIELV 165


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 261 SNYTKYDQLGILFDKLESTYPDL 329
           ++Y     L +L DKL+ TY +L
Sbjct: 351 ADYKLTRNLELLTDKLQQTYREL 373


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  FYDM*NNHNIAYESFTKIVQMQY 119
           +Y   ++HN+ Y +  + V+ QY
Sbjct: 264 YYSALSSHNLNYVNTEQFVKSQY 286


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 345 IGEFPSKVGKLLVLQITQDVQNE 413
           + E  SK GKL+ LQ     QN+
Sbjct: 48  VEELKSKPGKLVPLQCDLSNQND 70


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 261 SNYTKYDQLGILFDKLESTYPDL 329
           ++Y     L +L DKL+ TY +L
Sbjct: 351 ADYKLTRNLELLTDKLQQTYREL 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,856
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)