Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0873
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62630.1 68418.m07861 expressed protein                             28   2.8  
At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l...    28   2.8  
At1g50930.1 68414.m05726 hypothetical protein                          27   8.5  

>At5g62630.1 68418.m07861 expressed protein
          Length = 696

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 439 ILNAGRSGCSFCTSCVICSTSNFPTFDGNSPIEY 338
           + + G SG   C S V C  S  P  DG +P  Y
Sbjct: 296 VKSPGCSGRCACNSDVNCDPSKLPKDDGTTPCRY 329


>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
           protein [Arabidopsis thaliana] GI:12006422; contains
           Pfam profiles: PF02197 Regulatory subunit of type II PKA
           R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
           PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
           PF03730: Ku70/Ku80 C-terminal arm
          Length = 680

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 246 ILSKTSNYTKYDQLGILFDKLESTYPDLAKVYSIGEFPSKVGKLLVLQITQDVQNEHPER 425
           +L K   Y KYD++GI+    E T  +LA+   IG +   V  L  +++  ++  EH + 
Sbjct: 32  LLQKKLIYNKYDEVGIVVFGTEETGNELAR--EIGGY-ENVTVLRNIRVVDELAAEHVK- 87

Query: 426 PAFKIPLANMHGD 464
              ++P   + GD
Sbjct: 88  ---QLPRGTVAGD 97


>At1g50930.1 68414.m05726 hypothetical protein
          Length = 196

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 115 NTVISDFESPVHTTKMYRWIR 177
           +++ISD  SPVHTTK+   +R
Sbjct: 61  SSMISDAASPVHTTKINNVVR 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,361
Number of Sequences: 28952
Number of extensions: 209441
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)