Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0872
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.0  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 357 STDPYGVLPLWRSNDLN 407
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 226 AGCWRQRRAVV*KHFLCTMEGP 291
           A CW Q +AV+ +  L   + P
Sbjct: 391 ASCWAQFKAVLWRSILAVFKEP 412


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 226 AGCWRQRRAVV*KHFLCTMEGP 291
           A CW Q +AV+ +  L   + P
Sbjct: 391 ASCWAQFKAVLWRSILAVFKEP 412


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 337 LPSNKCGSRNKSTTSLAPPLYTG 269
           LP+++C SR  S + + P   +G
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSG 101


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 594 PRSWVWKLAASTRPHITPS*SATWTSV 514
           PRS++  L+ S R H+    SA  T++
Sbjct: 196 PRSYIPPLSTSMRSHLCNWGSANSTNI 222


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 594 PRSWVWKLAASTRPHITPS*SATWTSV 514
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 594 PRSWVWKLAASTRPHITPS*SATWTSV 514
           PRS++  L+ S R H+    SA  T++
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTNI 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,637
Number of Sequences: 336
Number of extensions: 3076
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)