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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0872
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   164   1e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    80   3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    76   5e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    72   6e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    59   4e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    52   9e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    46   3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    42   7e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.2  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   4.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   8.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  164 bits (398), Expect = 1e-41
 Identities = 74/83 (89%), Positives = 79/83 (95%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
           LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352

Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
           QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -3

Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
           FQPS LG+E  GIHE TYNSIMKCDVDIRKD
Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKD 292


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 36/83 (43%), Positives = 59/83 (71%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
           LY+N VLSGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357

Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
           +++ I+ +EY ++  +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIR 515
           F P  +G EA G+H   + SI+  D+D+R
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLR 295


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339
           L  N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404

Query: 338 STFQQMWISKQEYDESGP---SIVHRKC 264
            TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 336
           L  N V++GGT++ PG+++R+Q E+  LA  S + +           +VW GGSILASL 
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402

Query: 335 TFQQMWISKQEYDESG 288
            FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 568 GIHETTYNSIMKCDVDIR 515
           G+HE  Y SI+ CD ++R
Sbjct: 323 GLHELVYQSILACDSELR 340


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 363
           LY   VLSGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352

Query: 362 GGSILAS-LSTFQQMWISKQEYDESG 288
           GG++LA  ++    MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRK 512
           FQP  +G E  G+ E  +++I   DVDIRK
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRK 291


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 51.6 bits (118), Expect = 9e-08
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
 Frame = -2

Query: 512 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 375
           GLY N VLSGG+T++    +R+Q+++  +    +               + +I+   ++ 
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384

Query: 374 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 270
           +VW GGS+LA    F     +K +Y+E G SI  R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
           L  N V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377

Query: 329 QQMWISKQEYDESGPSIVHRK 267
               I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
           L +N +++GG    PG+  R+++E+T++ P    I +          W G S  +    F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693

Query: 329 QQMWISKQEYDESGPSIV 276
           +   ++++EY E GP  +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339
           LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I   +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588

Query: 338 STFQQMWISKQEYDESGPSIVHRK 267
               ++WI   ++   G  ++  K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 368 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 267
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 443 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 333
           KEI++ A S + +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -2

Query: 518 P*GLYANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 366
           P G  A +V +GG+  +PGI   +   I          + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 376 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 281
           TP  +     PPS+PS++   R  S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 370  YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284
            Y +   SSPP  P N  G  + N +TTS  P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 309 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 395
           F   HLL   + G+D + + YG L  W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 370  YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284
            Y +   SSPP  P N  G  + N +TTS  P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,126
Number of Sequences: 5004
Number of extensions: 46812
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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