BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0872 (603 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 164 1e-41 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 80 3e-16 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 5e-15 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 6e-14 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 4e-10 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 52 9e-08 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 3e-06 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 7e-05 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2 SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9 SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 8.5 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.5 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.5 SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.5 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.5 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 164 bits (398), Expect = 1e-41 Identities = 74/83 (89%), Positives = 79/83 (95%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330 LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352 Query: 329 QQMWISKQEYDESGPSIVHRKCF 261 QQMWISKQEYDESGP IV+RKCF Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375 Score = 60.1 bits (139), Expect = 2e-10 Identities = 26/31 (83%), Positives = 27/31 (87%) Frame = -3 Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509 FQPS LG+E GIHE TYNSIMKCDVDIRKD Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKD 292 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 79.8 bits (188), Expect = 3e-16 Identities = 36/83 (43%), Positives = 59/83 (71%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330 LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357 Query: 329 QQMWISKQEYDESGPSIVHRKCF 261 +++ I+ +EY ++ +++ R+ F Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379 Score = 32.7 bits (71), Expect = 0.042 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIR 515 F P +G EA G+H + SI+ D+D+R Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLR 295 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 75.8 bits (178), Expect = 5e-15 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339 L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404 Query: 338 STFQQMWISKQEYDESGP---SIVHRKC 264 TF Q+WIS+QEY+E G +++ ++C Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 72.1 bits (169), Expect = 6e-14 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 336 L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402 Query: 335 TFQQMWISKQEYDESG 288 FQ +W+SKQEYDE G Sbjct: 403 NFQHLWVSKQEYDEVG 418 Score = 27.5 bits (58), Expect = 1.6 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 568 GIHETTYNSIMKCDVDIR 515 G+HE Y SI+ CD ++R Sbjct: 323 GLHELVYQSILACDSELR 340 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 59.3 bits (137), Expect = 4e-10 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 363 LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352 Query: 362 GGSILAS-LSTFQQMWISKQEYDESG 288 GG++LA ++ MW+SK E++E G Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378 Score = 32.7 bits (71), Expect = 0.042 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -3 Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRK 512 FQP +G E G+ E +++I DVDIRK Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRK 291 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 51.6 bits (118), Expect = 9e-08 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%) Frame = -2 Query: 512 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 375 GLY N VLSGG+T++ +R+Q+++ + + + +I+ ++ Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384 Query: 374 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 270 +VW GGS+LA F +K +Y+E G SI R Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 46.4 bits (105), Expect = 3e-06 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330 L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377 Query: 329 QQMWISKQEYDESGPSIVHRK 267 I++ EY E G +I+ RK Sbjct: 378 NANKITRSEYSEHGANIMTRK 398 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 46.4 bits (105), Expect = 3e-06 Identities = 20/78 (25%), Positives = 39/78 (50%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330 L +N +++GG PG+ R+++E+T++ P I + W G S + F Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693 Query: 329 QQMWISKQEYDESGPSIV 276 + ++++EY E GP + Sbjct: 694 KAAKVTREEYLEKGPEYI 711 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 41.9 bits (94), Expect = 7e-05 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Frame = -2 Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339 LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I + Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588 Query: 338 STFQQMWISKQEYDESGPSIVHRK 267 ++WI ++ G ++ K Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 27.9 bits (59), Expect = 1.2 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2 Query: 368 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 267 ++GGSI+A S + + +++ +EY + GP+ +H K Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522 >SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 25.8 bits (54), Expect = 4.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 443 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 333 KEI++ A S + + + P E+ W ILA L+T Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248 >SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.0 bits (52), Expect = 8.5 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = -2 Query: 518 P*GLYANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 366 P G A +V +GG+ +PGI + I + P +M ++I+ P + + + W Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 376 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 281 TP + PPS+PS++ R S ++ APP Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 25.0 bits (52), Expect = 8.5 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = -3 Query: 370 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284 Y + SSPP P N G + N +TTS P Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643 >SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1284 Score = 25.0 bits (52), Expect = 8.5 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +3 Query: 309 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 395 F HLL + G+D + + YG L W S Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.0 bits (52), Expect = 8.5 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = -3 Query: 370 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284 Y + SSPP P N G + N +TTS P Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,421,126 Number of Sequences: 5004 Number of extensions: 46812 Number of successful extensions: 152 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 147 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 264253462 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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