Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0872
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 164 1e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 80 3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 5e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 6e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 4e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 52 9e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 7e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 8.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 164 bits (398), Expect = 1e-41
Identities = 74/83 (89%), Positives = 79/83 (95%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
Score = 60.1 bits (139), Expect = 2e-10
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPS LG+E GIHE TYNSIMKCDVDIRKD
Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKD 292
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.8 bits (188), Expect = 3e-16
Identities = 36/83 (43%), Positives = 59/83 (71%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 32.7 bits (71), Expect = 0.042
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIR 515
F P +G EA G+H + SI+ D+D+R
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLR 295
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 5e-15
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 338 STFQQMWISKQEYDESGP---SIVHRKC 264
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 6e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 336
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 335 TFQQMWISKQEYDESG 288
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 568 GIHETTYNSIMKCDVDIR 515
G+HE Y SI+ CD ++R
Sbjct: 323 GLHELVYQSILACDSELR 340
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 59.3 bits (137), Expect = 4e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 363
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 362 GGSILAS-LSTFQQMWISKQEYDESG 288
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRK 512
FQP +G E G+ E +++I DVDIRK
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRK 291
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 51.6 bits (118), Expect = 9e-08
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Frame = -2
Query: 512 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 375
GLY N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 374 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 270
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 329 QQMWISKQEYDESGPSIVHRK 267
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 329 QQMWISKQEYDESGPSIV 276
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.9 bits (94), Expect = 7e-05
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 339
LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 338 STFQQMWISKQEYDESGPSIVHRK 267
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 368 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 267
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 443 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 333
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 518 P*GLYANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 366
P G A +V +GG+ +PGI + I + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 376 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 281
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 370 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 309 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 395
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 370 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 284
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,126
Number of Sequences: 5004
Number of extensions: 46812
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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