Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0872
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 1e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 6e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 149 1e-36
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 3e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 2e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_54| Best HMM Match : Actin (HMM E-Value=0) 44 1e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78) 30 1.3
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 27 8.8
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) 27 8.8
SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5) 27 8.8
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.8
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 173 bits (420), Expect = 1e-43
Identities = 79/83 (95%), Positives = 83/83 (100%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = -3
Query: 598 QPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
QPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 237 QPSFLGMESSGIHETTYNSIMKCDVDIRKD 266
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 225 FQPSFLGMESAGIHETTYNSIMKCDVDIRKD 255
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 263 FQPSFLGMESAGIHETTYNSIMKCDVDIRKD 293
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 262 FQPSFLGMESAGIHETTYNSIMKCDVDIRKD 292
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 172 bits (418), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 263 FQPSFLGMESAGIHETTYNSIMKCDVDIRKD 293
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 170 bits (414), Expect = 6e-43
Identities = 79/83 (95%), Positives = 82/83 (98%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPSFLGME+ GIHETTYNSIMKCDVDIRKD
Sbjct: 262 FQPSFLGMESAGIHETTYNSIMKCDVDIRKD 292
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 149 bits (362), Expect = 1e-36
Identities = 67/83 (80%), Positives = 76/83 (91%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
LY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 329 QQMWISKQEYDESGPSIVHRKCF 261
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQP+FLGMEA GIHE YN IMKCDVDIRKD
Sbjct: 36 FQPAFLGMEAPGIHEAIYNCIMKCDVDIRKD 66
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 378
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 377 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 261
Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Frame = -2
Query: 512 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSVWIGGSILAS 342
GL+ + +++GG T+ G +R+ +E+ + P +M++K+I + E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 341 L 339
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = -2
Query: 593 LVLGYGSLRHPRDHI*LHHEVRRGHP*GLYANTVLSGGTTMYPGIADRMQKEITA-LAPS 417
+VL GS +P L E+++ LY VL G T+ Q +TA
Sbjct: 301 IVLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQ 355
Query: 416 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 288
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 356 KFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQP + +E G+ E +N+I D+D R +
Sbjct: 266 FQPHLINVEGVGVAELLFNTIQAADIDTRSE 296
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = -3
Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
FQPS LG + GIHE+ + SI KCD+D+R +
Sbjct: 2307 FQPSLLGRDIDGIHESIFKSIKKCDIDLRAE 2337
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -2
Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 357
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 356 SILASLSTFQQMWISKQEYDE 294
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_53938| Best HMM Match : Gln-synt_N (HMM E-Value=0.78)
Length = 140
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 363 RWIDPR-LPLYLPTNVDLETRVRRVWPLHCTQEVLLNDRASLPPAARG 223
RWIDPR + P NVD R +H + LL S+P +RG
Sbjct: 29 RWIDPRGNQIPAPPNVDSSGRSLSADGIHKSDLRLLGSSLSIPSTSRG 76
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 500 NTVLSGGTTMYPGIADRMQKEITALAP 420
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 437 FPFAYGRRFQGTWWYHRTIRCWRTVLTDVHVA--LHDGVICGLVDAAS 574
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
Length = 628
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -1
Query: 567 ASTRPHITPS*SATWTSVRTVRQHRIVRWYHHVPWNRRPYAKGNHSSRPIDN 412
AS+ P P+ AT S +++R I++ +H+ RP A+G SS P DN
Sbjct: 182 ASSAPD--PNNRATKVSKKSIRT--ILKVTNHLRTQPRPKARGQGSSTPWDN 229
>SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)
Length = 327
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 437 FPFAYGRRFQGTWWYHRTIRCWRTVLTDVHVA--LHDGVICGLVDAAS 574
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 352 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD 489
+DPP+ +Y L+GG ++ + FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPE 801
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 437 FPFAYGRRFQGTWWYHRTIRCWRTVLTDVHVA--LHDGVICGLVDAAS 574
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,471
Number of Sequences: 59808
Number of extensions: 401687
Number of successful extensions: 1221
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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