Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0872
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             138   5e-35
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  138 bits (333), Expect = 5e-35
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = -2

Query: 509 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 330
           LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTF
Sbjct: 68  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTF 127

Query: 329 QQMWIS 312
           QQMWIS
Sbjct: 128 QQMWIS 133



 Score = 72.5 bits (170), Expect = 3e-15
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -3

Query: 601 FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 509
           FQPSFLGMEACGIHETTYNSIMKCDVDIRKD
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKCDVDIRKD 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 495 RIVRWYHHVPWNRRPYAK 442
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 495 RIVRWYHHVPWNRRPYAK 442
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 332 FQQMWISKQEYDESGPSIVHRK 267
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 287 PSIVHRKCF*TTARRCLQQPAAGC 216
           P+ +  KC  TT   CL+   A C
Sbjct: 159 PAYLASKCALTTLTDCLRSELAQC 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,550
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)