Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0871
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0392 - 2815440-2815659,2815856-2816052                           27   6.4  
01_01_0451 + 3355782-3355823,3356410-3357222                           27   6.4  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    27   8.5  

>06_01_0392 - 2815440-2815659,2815856-2816052
          Length = 138

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 140 RPLIDLPQIALNSLHCIH*IGGTLSNSNTISQRFFYCLDGWTSL 9
           R LID  ++ L  L   H   G  S   T+ Q+F   +D W  L
Sbjct: 4   RELIDRDKLVLIDLQ-FHGFHGVKSEEKTLGQKFVVDVDAWMDL 46


>01_01_0451 + 3355782-3355823,3356410-3357222
          Length = 284

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 14  SSNHLSNKKTAEKLCWNWKGSPQSSECNVMNLMQFEAGQLTVSLRGPS 157
           +S+  +  K ++K C   KG P++S C    + Q   G+    +R P+
Sbjct: 58  NSSRKAPAKGSKKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPN 105


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 424  TSVPLSTTLPDYSLLRTVYKKSSPL 498
            TS+P S T P YS    +Y  SSP+
Sbjct: 1637 TSLPHSPTSPIYSATSPIYSPSSPI 1661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,659
Number of Sequences: 37544
Number of extensions: 106356
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)