Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0871
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)                 29   2.2  
SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25)                27   8.7  
SB_54298| Best HMM Match : Keratin_B2 (HMM E-Value=5)                  27   8.7  
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)                   27   8.7  

>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 190 RVRKRDIEAEGELKREEES 246
           RV ++D E+EG+ KREEES
Sbjct: 71  RVNRKDFESEGKEKREEES 89


>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
          Length = 448

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   WAVSSSNHLSNKKTAEKLCWNWKGS--PQSSECNVMNLMQFEAGQLTVSLRGPSCLM 166
           W V S   L N     K+C++W GS    S+   V N   F   QL    + P C++
Sbjct: 388 WMVGSHPSLRNSLVTRKVCYHWSGSCCRWSNNIKVRNCGGFYVYQLP---KTPVCML 441


>SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25)
          Length = 257

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 196 RKRDIEAEGELKREEE 243
           RKRD+EAE  +K EEE
Sbjct: 105 RKRDLEAEKRIKEEEE 120


>SB_54298| Best HMM Match : Keratin_B2 (HMM E-Value=5)
          Length = 244

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   WAVSSSNHLSNKKTAEKLCWNWKGS--PQSSECNVMNLMQFEAGQLTVSLRGPSCLM 166
           W V S   L       K+C++W GS    S+   V N   F   QL    + P+C++
Sbjct: 184 WIVGSHPSLRYSLVTRKVCYHWSGSCCRWSNNIKVRNCGGFYVYQLP---KTPACML 237


>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
          Length = 448

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   WAVSSSNHLSNKKTAEKLCWNWKGS--PQSSECNVMNLMQFEAGQLTVSLRGPSCLM 166
           W V S   L       K+C++W GS    S+   V N   F   QL    + P+C++
Sbjct: 388 WMVGSHPSLRYSLVTRKVCYHWSGSCCRWSNNIKVRNCGGFYVYQLP---KTPACML 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,101,884
Number of Sequences: 59808
Number of extensions: 120040
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)