Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0871
         (502 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058641-1|AAL13870.1|  663|Drosophila melanogaster LD34105p pro...    29   3.5  
AE014134-611|AAF51102.1|  663|Drosophila melanogaster CG3238-PA ...    29   3.5  
AY113280-1|AAM29285.1|  780|Drosophila melanogaster AT17882p pro...    28   6.2  
AE014134-330|AAF51314.1|  971|Drosophila melanogaster CG4238-PA ...    28   6.2  

>AY058641-1|AAL13870.1|  663|Drosophila melanogaster LD34105p
           protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 11  SSSNHLSNKKTAEKLCWNW---KGSPQSSECNVMNLMQ-FEAGQLTVSL 145
           +S NH++ ++   KL W +   K    + +C  M+L + FEAGQ  V+L
Sbjct: 537 ASGNHITRRQVPLKLAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVAL 585


>AE014134-611|AAF51102.1|  663|Drosophila melanogaster CG3238-PA
           protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 11  SSSNHLSNKKTAEKLCWNW---KGSPQSSECNVMNLMQ-FEAGQLTVSL 145
           +S NH++ ++   KL W +   K    + +C  M+L + FEAGQ  V+L
Sbjct: 537 ASGNHITRRQVPLKLAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVAL 585


>AY113280-1|AAM29285.1|  780|Drosophila melanogaster AT17882p
           protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 17  SNHLSNKKTAE---KLCWNWKGSPQSSECNVMNLMQFEAG 127
           ++H++N  +AE    L W W G    S+  +  L+QF  G
Sbjct: 675 AHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLLQFTTG 714


>AE014134-330|AAF51314.1|  971|Drosophila melanogaster CG4238-PA
           protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 17  SNHLSNKKTAE---KLCWNWKGSPQSSECNVMNLMQFEAG 127
           ++H++N  +AE    L W W G    S+  +  L+QF  G
Sbjct: 866 AHHIANGNSAEFRRVLAWFWAGVSNFSQTEMARLLQFTTG 905


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,198
Number of Sequences: 53049
Number of extensions: 186423
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)