Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0871
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ...    29   2.3  
At4g12370.1 68417.m01955 hypothetical protein                          28   4.1  
At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical ...    27   9.4  

>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
           DREB2A GI:3738230 from [Arabidopsis thaliana] ;
           supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
          Length = 335

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 8   VSSSNHLSNKKTAEKLCWNWKGSPQSSECNVMNLMQFEAGQLTVSLRGPS 157
           VS+       K ++K C   KG P++S C+   + Q   G+    +R P+
Sbjct: 49  VSTKKRKVPAKGSKKGCMKGKGGPENSRCSFRGVRQRIWGKWVAEIREPN 98


>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 74  TLSNSNTI-SQRFFYCLDGWTSL 9
           TL++SN + ++R FYCLDG  SL
Sbjct: 125 TLNHSNVVYAKRRFYCLDGQGSL 147


>At3g11020.1 68416.m01330 DRE-binding protein (DREB2B) identical to
           DREB2B GI:3738232 from [Arabidopsis thaliana]; supported
           by cDNA:gi_3738231_dbj_AB007791.1_AB007791
          Length = 330

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 38  KTAEKLCWNWKGSPQSSECNVMNLMQFEAGQLTVSLRGP 154
           K ++K C   KG P +S C+   + Q   G+    +R P
Sbjct: 58  KGSKKGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREP 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,295
Number of Sequences: 28952
Number of extensions: 87765
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)