BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0869 (608 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 1.2 11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 1.2 09_02_0036 + 3217163-3217584,3217752-3218322 30 1.2 12_01_0426 - 3356350-3356745,3357604-3357921 29 2.2 06_01_0092 - 775290-775691 28 6.7 01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 6.7 04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.8 >11_06_0294 + 22022630-22024006,22024109-22024234,22024319-22024423, 22024525-22024659,22024798-22024847,22026487-22026545, 22026819-22026928,22027941-22028174,22028278-22028377, 22028699-22028829,22029834-22029914,22029970-22030128 Length = 888 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 328 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 471 L+R + PF SW N +A D+ + L LNG + + LK L Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446 >11_06_0278 - 21854859-21855101,21855529-21855587,21855684-21855711, 21855812-21856702,21856792-21857011,21857638-21857687, 21863174-21863284,21863379-21863483,21863568-21863693, 21863796-21865187 Length = 1074 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 328 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 471 L+R + PF SW N +A D+ + L LNG + + LK L Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451 >09_02_0036 + 3217163-3217584,3217752-3218322 Length = 330 Score = 30.3 bits (65), Expect = 1.2 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 266 ITIHWPSFYNVV-TGKTLALPNLIALQH 346 I+ W F N+V +G TL++PN + LQH Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96 >12_01_0426 - 3356350-3356745,3357604-3357921 Length = 237 Score = 29.5 bits (63), Expect = 2.2 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +1 Query: 205 SLVSLKLEGGP--GTQFALSESYYNSLAVVLQRRDWEN 312 S V++ ++G T SESYY V +Q RDW N Sbjct: 184 STVAVYIDGKQKFSTNVIPSESYYFKFGVYMQHRDWSN 221 >06_01_0092 - 775290-775691 Length = 133 Score = 27.9 bits (59), Expect = 6.7 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -1 Query: 386 RASSLLRQLAKGGCAARR 333 RA+SLLRQL + GCAA + Sbjct: 22 RAASLLRQLIEDGCAAAK 39 >01_06_1061 - 34169469-34169624,34170837-34170938,34171029-34171180, 34172087-34172153,34172239-34172419,34172655-34172778, 34174775-34174871,34175929-34176331,34176729-34176888, 34177412-34177486,34177714-34177892,34178224-34178303, 34178561-34179322 Length = 845 Score = 27.9 bits (59), Expect = 6.7 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -1 Query: 419 RLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFS----QSRRCKTTASEL*YDSLR 252 +LR+CW G + LR G ++ TPG S ++RRC+ +S++ R Sbjct: 503 QLRDCWNGELLHGGKFLR----GRRVETDMAPATPGGSSQLVENRRCQLPSSQITVKMTR 558 Query: 251 ANWVPG 234 N G Sbjct: 559 RNTPTG 564 >04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902, 4208006-4208297,4209278-4209569,4210013-4210465 Length = 783 Score = 27.5 bits (58), Expect = 8.8 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 278 WPSFYNVV-TGKTLALPNLIALQH 346 W F N+V +G TL+LP + LQH Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,936,519 Number of Sequences: 37544 Number of extensions: 344168 Number of successful extensions: 876 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 876 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1454766756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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