Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0868
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    67   2e-12
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    32   0.057
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   2.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.6  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXX 431
           R++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                  
Sbjct: 60  RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119

Query: 432 XXXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCI 611
                   +P  ++ G N V  L+E ++                       +KMGVPY I
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAI 179

Query: 612 V 614
           V
Sbjct: 180 V 180



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRRLYFSVV*KCP 294
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+  RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +2

Query: 452 KEAQHHPIRHKHSHQAGREKK---AQLVVIAHDVDPIELVLFLPALC 583
           ++A H+    K +++A +      ++ +V+A D +PIE++L LP LC
Sbjct: 24  QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLC 70


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = +3

Query: 135 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFT 314
           Q+N ++S++E+A E    S HS +S        +    +P Q  ++ +RL + PP++QFT
Sbjct: 97  QQNSKNSIKEDANEHSVNSAHSKSS-----SNASPESLNPSQ--MMSKRLSL-PPMSQFT 148

Query: 315 QT 320
            +
Sbjct: 149 DS 150


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 362  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLT-WMRIYLGHLTNLDK 213
            L+N ++ L  +L + L  +V++  H  TTL Y+L    + IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 261 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 362
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 489  LCLCRIGWC 463
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 443 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 273
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 233 GPSISASTSEGCTSASSESAPSD 301
           GPS+S+++     S+SS S PS+
Sbjct: 355 GPSLSSASQPSAASSSSSSEPSN 377


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -3

Query: 512 SFLDQLGDCVCAGSDGVGPLWWRLIFLG---NLSFSSFPQPLFPGCFSLRPVFLQNLEKA 342
           S+LD L DC+ + S   G L   L  L    +++  + P   +    +L   +L N  K 
Sbjct: 371 SYLDSLNDCLLSESTHTGVLCSSLKLLSKFLDVTHMNVPLSKYENIVTLVLEYLANSSKG 430

Query: 341 LSCSLVQCLGKLVDRRGHFQTTLK 270
           L+   ++        RGH Q   K
Sbjct: 431 LASKSIE----FSKNRGHSQKKRK 450


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 333 TAKGLFKILEKYR 371
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 467 HPIRHKHSHQAGREKKAQLVVIAHDV 544
           HP RH    +A  E+K Q++  A++V
Sbjct: 36  HPDRHTADQKAAAEEKFQIIQHAYEV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,502
Number of Sequences: 5004
Number of extensions: 41488
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)