BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0868 (616 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 67 2e-12 SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 32 0.057 SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 2.2 SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.8 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.0 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.0 SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.6 SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.6 SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 6.6 SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 8.7 SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 8.7 >SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 67.3 bits (157), Expect = 2e-12 Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXX 431 R++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET Sbjct: 60 RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119 Query: 432 XXXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCI 611 +P ++ G N V L+E ++ +KMGVPY I Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAI 179 Query: 612 V 614 V Sbjct: 180 V 180 Score = 66.1 bits (154), Expect = 4e-12 Identities = 29/49 (59%), Positives = 36/49 (73%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRRLYFSVV*KCP 294 NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+ RR ++ K P Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72 >SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosaccharomyces pombe|chr 1|||Manual Length = 125 Score = 32.3 bits (70), Expect = 0.057 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Frame = +2 Query: 452 KEAQHHPIRHKHSHQAGREKK---AQLVVIAHDVDPIELVLFLPALC 583 ++A H+ K +++A + ++ +V+A D +PIE++L LP LC Sbjct: 24 QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLC 70 >SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 27.1 bits (57), Expect = 2.2 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = +3 Query: 135 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFT 314 Q+N ++S++E+A E S HS +S + +P Q ++ +RL + PP++QFT Sbjct: 97 QQNSKNSIKEDANEHSVNSAHSKSS-----SNASPESLNPSQ--MMSKRLSL-PPMSQFT 148 Query: 315 QT 320 + Sbjct: 149 DS 150 >SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 26.6 bits (56), Expect = 2.8 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -3 Query: 362 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLT-WMRIYLGHLTNLDK 213 L+N ++ L +L + L +V++ H TTL Y+L + IY + + DK Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.8 bits (54), Expect = 5.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 261 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 362 KAVL LK P IN F + L + +F++LE Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 5.0 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = -2 Query: 489 LCLCRIGWC 463 LCLC IGWC Sbjct: 2326 LCLCYIGWC 2334 >SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.4 bits (53), Expect = 6.6 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = -3 Query: 443 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 273 L F L +S Q FP FS L+NL + ++ Q L + R +T+ Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253 >SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 615 Score = 25.4 bits (53), Expect = 6.6 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 233 GPSISASTSEGCTSASSESAPSD 301 GPS+S+++ S+SS S PS+ Sbjct: 355 GPSLSSASQPSAASSSSSSEPSN 377 >SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr 3|||Manual Length = 828 Score = 25.4 bits (53), Expect = 6.6 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Frame = -3 Query: 512 SFLDQLGDCVCAGSDGVGPLWWRLIFLG---NLSFSSFPQPLFPGCFSLRPVFLQNLEKA 342 S+LD L DC+ + S G L L L +++ + P + +L +L N K Sbjct: 371 SYLDSLNDCLLSESTHTGVLCSSLKLLSKFLDVTHMNVPLSKYENIVTLVLEYLANSSKG 430 Query: 341 LSCSLVQCLGKLVDRRGHFQTTLK 270 L+ ++ RGH Q K Sbjct: 431 LASKSIE----FSKNRGHSQKKRK 450 >SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 25.0 bits (52), Expect = 8.7 Identities = 9/13 (69%), Positives = 13/13 (100%) Frame = +3 Query: 333 TAKGLFKILEKYR 371 TA+GL+K+LEKY+ Sbjct: 94 TAQGLYKMLEKYK 106 >SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 25.0 bits (52), Expect = 8.7 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 467 HPIRHKHSHQAGREKKAQLVVIAHDV 544 HP RH +A E+K Q++ A++V Sbjct: 36 HPDRHTADQKAAAEEKFQIIQHAYEV 61 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,270,502 Number of Sequences: 5004 Number of extensions: 41488 Number of successful extensions: 141 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 269634532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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