BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0868 (616 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 75 6e-14 08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 64 8e-11 01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 60 2e-09 07_03_1414 - 26403361-26403969 31 0.96 11_04_0414 + 17386806-17387936 30 1.3 07_03_1422 + 26462871-26463434,26463772-26463897 29 2.2 07_03_1413 - 26396426-26396890 29 2.2 12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 28 5.1 02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830... 28 5.1 04_04_0188 - 23433753-23436572 28 6.8 03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 28 6.8 05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 8.9 05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248... 27 8.9 03_03_0006 - 13666961-13667755 27 8.9 >09_04_0677 - 19388888-19389019,19389124-19389216,19389317-19389445, 19389559-19389728,19390280-19390481,19390576-19390623, 19390797-19390799 Length = 258 Score = 74.5 bits (175), Expect = 6e-14 Identities = 46/134 (34%), Positives = 61/134 (45%) Frame = +3 Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392 L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102 Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXC 572 +P ++ G N VT L+E+ + Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWL 162 Query: 573 QRYARKMGVPYCIV 614 RKM VPYCIV Sbjct: 163 PALCRKMEVPYCIV 176 Score = 58.8 bits (136), Expect = 3e-09 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264 NPLFEKRPK F IG + P +DL RFV+WPK +RI +R Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 60 >08_02_0211 - 14333553-14333684,14333795-14333887,14334019-14334105, 14334220-14334389,14334985-14335186,14335604-14335606 Length = 228 Score = 64.1 bits (149), Expect = 8e-11 Identities = 37/101 (36%), Positives = 52/101 (51%) Frame = +3 Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392 L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86 Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRR 515 +P ++ G N VT L+E+ + Sbjct: 87 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSK 127 Score = 58.8 bits (136), Expect = 3e-09 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264 NPLFEKRPK F IG + P +DL RFV+WPK +RI +R Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 44 Score = 50.0 bits (114), Expect = 1e-06 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = +2 Query: 506 EKKAQLVVIAHDVDPIELVLFLPALC 583 + KAQLVVIAHDVDPIELV++LPALC Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALC 150 >01_07_0018 - 40488702-40488833,40488928-40489020,40489125-40489253, 40489379-40489500,40490292-40490544,40490636-40490638 Length = 243 Score = 59.7 bits (138), Expect = 2e-09 Identities = 25/39 (64%), Positives = 29/39 (74%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264 NPLFEKRPK F IG + P +DL RFVRWPK +RI +R Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61 Score = 50.0 bits (114), Expect = 1e-06 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = +2 Query: 506 EKKAQLVVIAHDVDPIELVLFLPALC 583 + KAQLVVIAHDVDPIELV++LPALC Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALC 151 Score = 47.6 bits (108), Expect = 8e-06 Identities = 34/120 (28%), Positives = 52/120 (43%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434 RQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E Sbjct: 59 RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------E 101 Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614 +P ++ G + VT L+E+ + RKM +PYCIV Sbjct: 102 GKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161 >07_03_1414 - 26403361-26403969 Length = 202 Score = 30.7 bits (66), Expect = 0.96 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118 A +P+ + A + P + G++ + + +T + L P LEE + GL L+D Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122 >11_04_0414 + 17386806-17387936 Length = 376 Score = 30.3 bits (65), Expect = 1.3 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -3 Query: 548 DQHHER*PQAAPSFLDQLGDCVCAGSDGVGPLW 450 D+HH AAPS ++Q+ D C G GP W Sbjct: 215 DEHHPAAAAAAPS-IEQVFDLFCDGRSIAGPQW 246 >07_03_1422 + 26462871-26463434,26463772-26463897 Length = 229 Score = 29.5 bits (63), Expect = 2.2 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118 A +P+ + + P Y G+V + + +T + L P LEE GL L D Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120 >07_03_1413 - 26396426-26396890 Length = 154 Score = 29.5 bits (63), Expect = 2.2 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118 A +P+ + + P Y G+V + + +T + L P LEE GL L D Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74 >12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313, 9162621-9163030 Length = 460 Score = 28.3 bits (60), Expect = 5.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 230 DGPSISASTSEGCTSASSESAPSDQPIYPDTGQDYS*GPFQ 352 D P + S +E +S +S A +QP P T D++ GP + Sbjct: 268 DAPRVEVSPTERRSSCASTEAAEEQPPVP-TAVDHTMGPIE 307 >02_05_0292 + 27581862-27581913,27582395-27582615,27582691-27583087, 27583645-27583730,27584229-27584292,27584395-27584507, 27584998-27585036,27585037-27585177 Length = 370 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Frame = -3 Query: 515 PSFLDQLGDCVCAGSDGVGPLWWRLIFL-----GNLSFSSFPQPLFP 390 PS ++ G C+C GS GP++ +L L S P PL P Sbjct: 57 PSLIEYFGYCLCCGSHFAGPVYEMKDYLEYTERKGLWASPTPSPLLP 103 >04_04_0188 - 23433753-23436572 Length = 939 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 198 SANS*LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLD 326 SA + L Q+CK + RQ A R + PPP + + LD Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63 >03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941, 9996019-9996270,9996356-9996588,9996695-9996812, 9996884-9997036,9997126-9997212,9997407-9997697 Length = 594 Score = 27.9 bits (59), Expect = 6.8 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +2 Query: 452 KEAQHHPIRHKH--SHQAGREKKAQLVVIAHDVDPI 553 K QHHP+ +KH + +AG+ K A + + D D + Sbjct: 321 KMCQHHPLEYKHLITIKAGKPKGAVVDALKGDPDKV 356 >05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 Length = 160 Score = 27.5 bits (58), Expect = 8.9 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = +2 Query: 119 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 223 S L PR L +L +RRG R L +VRA S V PD Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50 >05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831, 2482756-2482878,2482968-2483087,2483557-2483642, 2483960-2484070,2484194-2484274,2484475-2484546, 2484631-2484809,2485257-2485485 Length = 395 Score = 27.5 bits (58), Expect = 8.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 230 DGPSISASTSEGCTSASSESAPSDQPI 310 D P+ +ASTS +A+++ AP D P+ Sbjct: 54 DKPASAASTSSAADAAAADVAPKDIPV 80 >03_03_0006 - 13666961-13667755 Length = 264 Score = 27.5 bits (58), Expect = 8.9 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = +2 Query: 464 HHPIRHKHSHQAGREKKAQLVVI 532 HH +RH+H H R ++ V+ Sbjct: 100 HHRVRHRHRHHRDRGRRGHAAVV 122 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,632,193 Number of Sequences: 37544 Number of extensions: 306677 Number of successful extensions: 924 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 922 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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