Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0868
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 75 6e-14
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 64 8e-11
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 60 2e-09
07_03_1414 - 26403361-26403969 31 0.96
11_04_0414 + 17386806-17387936 30 1.3
07_03_1422 + 26462871-26463434,26463772-26463897 29 2.2
07_03_1413 - 26396426-26396890 29 2.2
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 28 5.1
02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830... 28 5.1
04_04_0188 - 23433753-23436572 28 6.8
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 28 6.8
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 8.9
05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248... 27 8.9
03_03_0006 - 13666961-13667755 27 8.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 74.5 bits (175), Expect = 6e-14
Identities = 46/134 (34%), Positives = 61/134 (45%)
Frame = +3
Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102
Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXC 572
+P ++ G N VT L+E+ +
Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWL 162
Query: 573 QRYARKMGVPYCIV 614
RKM VPYCIV
Sbjct: 163 PALCRKMEVPYCIV 176
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264
NPLFEKRPK F IG + P +DL RFV+WPK +RI +R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 60
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 64.1 bits (149), Expect = 8e-11
Identities = 37/101 (36%), Positives = 52/101 (51%)
Frame = +3
Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86
Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRR 515
+P ++ G N VT L+E+ +
Sbjct: 87 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSK 127
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264
NPLFEKRPK F IG + P +DL RFV+WPK +RI +R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 44
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 506 EKKAQLVVIAHDVDPIELVLFLPALC 583
+ KAQLVVIAHDVDPIELV++LPALC
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALC 150
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHVRR 264
NPLFEKRPK F IG + P +DL RFVRWPK +RI +R
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 506 EKKAQLVVIAHDVDPIELVLFLPALC 583
+ KAQLVVIAHDVDPIELV++LPALC
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALC 151
Score = 47.6 bits (108), Expect = 8e-06
Identities = 34/120 (28%), Positives = 52/120 (43%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 59 RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------E 101
Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
+P ++ G + VT L+E+ + RKM +PYCIV
Sbjct: 102 GKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161
>07_03_1414 - 26403361-26403969
Length = 202
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -2
Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118
A +P+ + A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>11_04_0414 + 17386806-17387936
Length = 376
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 548 DQHHER*PQAAPSFLDQLGDCVCAGSDGVGPLW 450
D+HH AAPS ++Q+ D C G GP W
Sbjct: 215 DEHHPAAAAAAPS-IEQVFDLFCDGRSIAGPQW 246
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118
A +P+ + + P Y G+V + + +T + L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 276 AEVQPSDVDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 118
A +P+ + + P Y G+V + + +T + L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 230 DGPSISASTSEGCTSASSESAPSDQPIYPDTGQDYS*GPFQ 352
D P + S +E +S +S A +QP P T D++ GP +
Sbjct: 268 DAPRVEVSPTERRSSCASTEAAEEQPPVP-TAVDHTMGPIE 307
>02_05_0292 +
27581862-27581913,27582395-27582615,27582691-27583087,
27583645-27583730,27584229-27584292,27584395-27584507,
27584998-27585036,27585037-27585177
Length = 370
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -3
Query: 515 PSFLDQLGDCVCAGSDGVGPLWWRLIFL-----GNLSFSSFPQPLFP 390
PS ++ G C+C GS GP++ +L L S P PL P
Sbjct: 57 PSLIEYFGYCLCCGSHFAGPVYEMKDYLEYTERKGLWASPTPSPLLP 103
>04_04_0188 - 23433753-23436572
Length = 939
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 198 SANS*LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLD 326
SA + L Q+CK + RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>03_02_0635 +
9994327-9994644,9995510-9995706,9995806-9995941,
9996019-9996270,9996356-9996588,9996695-9996812,
9996884-9997036,9997126-9997212,9997407-9997697
Length = 594
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 452 KEAQHHPIRHKH--SHQAGREKKAQLVVIAHDVDPI 553
K QHHP+ +KH + +AG+ K A + + D D +
Sbjct: 321 KMCQHHPLEYKHLITIKAGKPKGAVVDALKGDPDKV 356
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 119 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 223
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>05_01_0317 -
2481308-2481350,2481611-2481687,2481765-2481831,
2482756-2482878,2482968-2483087,2483557-2483642,
2483960-2484070,2484194-2484274,2484475-2484546,
2484631-2484809,2485257-2485485
Length = 395
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 230 DGPSISASTSEGCTSASSESAPSDQPI 310
D P+ +ASTS +A+++ AP D P+
Sbjct: 54 DKPASAASTSSAADAAAADVAPKDIPV 80
>03_03_0006 - 13666961-13667755
Length = 264
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 464 HHPIRHKHSHQAGREKKAQLVVI 532
HH +RH+H H R ++ V+
Sbjct: 100 HHRVRHRHRHHRDRGRRGHAAVV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,193
Number of Sequences: 37544
Number of extensions: 306677
Number of successful extensions: 924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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