Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0868
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   9e-16
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        50   1e-06
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        31   0.74 
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             30   1.3  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.2  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 44/120 (36%), Positives = 56/120 (46%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET                  
Sbjct: 65  RQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEG 124

Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
                  +P  ++ G N +T LVE ++                       RKM VPYCIV
Sbjct: 125 KEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIV 184



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKL 63


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/25 (88%), Positives = 25/25 (100%)
 Frame = +2

Query: 509 KKAQLVVIAHDVDPIELVLFLPALC 583
           KKAQLVVIAHDVDPIE+V++LPALC
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALC 83



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 33/90 (36%)
 Frame = +3

Query: 345 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRRRXX 524
           LFK+L KYRPET                         +P  ++ G N +T LVE ++   
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 525 XXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
                               RKM VPYCIV
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIV 93


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 515 AQLVVIAHDVDPIELVLFLPALC 583
           A+ +V+A D +P+E++L LP LC
Sbjct: 110 AEFIVMAADTEPLEILLHLPLLC 132


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 242 ISASTSEGCTSASSESAPSDQPIYPDTG 325
           I+A      T+ASSE+APS  P  PD G
Sbjct: 34  IAARMGSASTAASSEAAPSSAPSMPDYG 61


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 460 PTPSDPAQTQSPSWSRKEGAACGHRS*C*SY*AGSLPASVMPVKWVYH 603
           P  SDP  +++P+ S      CGH+  C     G +P++V+  K +Y+
Sbjct: 599 PLGSDPYLSKTPTSSINRCKCCGHKEKC-----GDVPSNVLTGKAIYY 641


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 458 PLWWRLIFLGNLSFSSFPQPLFPG 387
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,094
Number of Sequences: 59808
Number of extensions: 327146
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)