Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0868
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 87 9e-18
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 75 3e-14
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 63 2e-10
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 63 2e-10
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.023
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 31 0.86
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.1
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 24 6.9
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 8.1
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 8.1
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 87.0 bits (206), Expect = 9e-18
Identities = 46/120 (38%), Positives = 57/120 (47%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 66 RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAG 125
Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
RPNT+R G NT+T+LVE RR RK VPY I+
Sbjct: 126 KKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 185
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 64
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 75.4 bits (177), Expect = 3e-14
Identities = 46/120 (38%), Positives = 57/120 (47%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 66 RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------ 107
Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
RPNT+R G NT+T+LVE RR RK VPY I+
Sbjct: 108 --TEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 165
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 64
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = +2
Query: 509 KKAQLVVIAHDVDPIELVLFLPALC 583
++AQLV+IAHDV+P+E+VL LPALC
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALC 155
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLD 326
RQ A+LQ+RLKVPP INQF LD
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 380
RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 422 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 303
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 30.7 bits (66), Expect = 0.86
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 515 AQLVVIAHDVDPIELVLFLPALC 583
++++V+A D +P+E++L LP LC
Sbjct: 51 SEIIVMAADAEPLEILLHLPLLC 73
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 295 LRSTNLPRHWTRLQLRA 345
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 445 LHQRGPTPSDPAQTQSP 495
L Q P P+ PAQTQ+P
Sbjct: 213 LAQPPPPPAPPAQTQAP 229
Score = 21.8 bits (44), Expect(2) = 6.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 472 DPAQTQSPSWSRKEGAACGHRS 537
DP + ++PS+ E GHRS
Sbjct: 251 DPPRPKNPSYKPDEIIVDGHRS 272
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 491 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 360
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 491 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 360
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 491 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 360
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,873
Number of Sequences: 27780
Number of extensions: 241817
Number of successful extensions: 680
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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