Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0868
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 77 1e-14
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 76 2e-14
At5g58340.1 68418.m07305 expressed protein ; expression supporte... 29 3.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.2
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 4.3
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m... 27 7.5
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 7.5
At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOA... 27 7.5
At5g52310.1 68418.m06492 low-temperature-responsive protein 78 (... 27 9.9
At1g63050.1 68414.m07122 membrane bound O-acyl transferase (MBOA... 27 9.9
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 27 9.9
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 76.6 bits (180), Expect = 1e-14
Identities = 45/120 (37%), Positives = 56/120 (46%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 56 RQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAE 114
Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
+P ++ G N VT L+E+ + RKM VPYCIV
Sbjct: 115 GKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 174
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFE+RPK F IG + P +DLSR+++WPK IR+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRL 54
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 76.2 bits (179), Expect = 2e-14
Identities = 44/120 (36%), Positives = 56/120 (46%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 57 RQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAE 115
Query: 435 XXXXXXXRPNTIRSGTNTVTKLVEKRRRXXXXXXXXXXXXXXXXXCQRYARKMGVPYCIV 614
+P ++ G N VT L+E+ + RKM VPYCIV
Sbjct: 116 GKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 175
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
NPLFE+RPK F IG + P +DLSR+++WPK IR+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRL 55
>At5g58340.1 68418.m07305 expressed protein ; expression supported
by MPSS
Length = 466
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 431 QER*ASTKEAQHHPIRHKHSHQAGREKKAQLVVIAHDVDP 550
+E S ++ +H P K A RE K LV I +DP
Sbjct: 272 EEHTVSAQDQEHEPSLDKGDEMAARELKEYLVEIQGHIDP 311
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 473 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 315
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 518 APSFLDQLGDCVCAGSDGVGPLWWRLI 438
+P LDQ D C G G GP W ++
Sbjct: 212 SPVLLDQAFDLYCRGVIGFGPFWEHML 238
>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
melanogaster, EMBL:AE003739
Length = 549
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 186 WSGHSANS*LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQ 308
+ GHS N+ L++ +A+ P +K ++K PP + +
Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 434 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 339
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
>At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to porcupine from [Xenopus
laevis] GI:6714514, GI:6714520, GI:6714518, GI:6714516;
contains Pfam profile PF03062: MBOAT family
Length = 462
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 515 PSFLDQLGDCVCAGSDGVGPLW 450
PS ++ G C+C GS GP++
Sbjct: 157 PSLIEYFGYCLCCGSHFAGPVY 178
>At5g52310.1 68418.m06492 low-temperature-responsive protein 78
(LTI78) / desiccation-responsive protein 29A (RD29A)
Length = 710
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 218 PDL*DGPSISASTSEGCTSASSESAPSDQPIYPDTGQDYS 337
P++ D P ++ E AS E P ++P DY+
Sbjct: 71 PEVIDAPGVTGKPRETNVPASEEIIPPGTKVFPVVSSDYT 110
>At1g63050.1 68414.m07122 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to porcupine from [Xenopus
laevis] GI:6714514, GI:6714520, GI:6714518, GI:6714516;
contains Pfam profile PF03062: MBOAT family
Length = 465
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 515 PSFLDQLGDCVCAGSDGVGPLW 450
PS ++ G C+C GS GP++
Sbjct: 160 PSLIEYFGYCLCCGSHFAGPVF 181
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 452 KEAQHHPIRHKHSHQAGREKKAQLVVIAHDVDPIELVLFL 571
K+ QH ++HK H + KAQ + + ++ +L+ ++
Sbjct: 128 KDLQHKLLKHKAIHIVKTDTKAQTLTVQGTIESAKLLAYI 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,231
Number of Sequences: 28952
Number of extensions: 231864
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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