Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0867
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    27   1.3  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   3.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   4.1  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   5.4  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   5.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   9.4  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    24   9.4  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 354 TGSKVTKLINPGPFISFLHTTFRSLRGGPVP 446
           TG  +  LIN  P++   H + R L G  +P
Sbjct: 582 TGKNLIGLINTHPYLELSHVSSRELEGTKLP 612


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 258 LNNITVCIISYYIISPLSKITLIIFI 181
           L +I   I +YY++S  +KIT+ IF+
Sbjct: 409 LFSIFCTIAAYYLVSSSTKITVFIFL 434


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 298 DLAQTTHHVLLKWLE*HHSLYNILLYYQSAFEDHINYFYKY 176
           D     H +LLK L     L N +L YQ+ F +  N+   Y
Sbjct: 328 DYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQTY 368


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 84  LHSKYKIISINNKALNHYCVLL-EHY 158
           LH+K + +S+N+  +NH   LL EH+
Sbjct: 437 LHNKIQGLSLNHPKMNHLLELLKEHF 462


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 383 PGPIHFLPPHYFQILE 430
           P P+ FL PHYF +++
Sbjct: 94  PKPLKFLRPHYFTLVK 109


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 343  MWHAYGQLCFSSSKLDLAQTTHHVLLK 263
            MW  +  LC  S ++ LA+ + ++LL+
Sbjct: 1505 MWIKFANLCRKSGRISLAKKSLNLLLE 1531


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 247 HSLYNILLYYQSAFEDHINYFYKYKTGQY 161
           + + N + Y QSA+ + I+    +K GQY
Sbjct: 372 YGITNDVAYLQSAYLEQISALQYWKQGQY 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,066
Number of Sequences: 5004
Number of extensions: 36511
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)