BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0867 (450 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 27 1.3 SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 3.1 SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 4.1 SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 5.4 SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 5.4 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 24 9.4 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 24 9.4 >SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 885 Score = 27.1 bits (57), Expect = 1.3 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +3 Query: 354 TGSKVTKLINPGPFISFLHTTFRSLRGGPVP 446 TG + LIN P++ H + R L G +P Sbjct: 582 TGKNLIGLINTHPYLELSHVSSRELEGTKLP 612 >SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 25.8 bits (54), Expect = 3.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -1 Query: 258 LNNITVCIISYYIISPLSKITLIIFI 181 L +I I +YY++S +KIT+ IF+ Sbjct: 409 LFSIFCTIAAYYLVSSSTKITVFIFL 434 >SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1032 Score = 25.4 bits (53), Expect = 4.1 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 298 DLAQTTHHVLLKWLE*HHSLYNILLYYQSAFEDHINYFYKY 176 D H +LLK L L N +L YQ+ F + N+ Y Sbjct: 328 DYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQTY 368 >SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 25.0 bits (52), Expect = 5.4 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +3 Query: 84 LHSKYKIISINNKALNHYCVLL-EHY 158 LH+K + +S+N+ +NH LL EH+ Sbjct: 437 LHNKIQGLSLNHPKMNHLLELLKEHF 462 >SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|Schizosaccharomyces pombe|chr 2|||Manual Length = 891 Score = 25.0 bits (52), Expect = 5.4 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +2 Query: 383 PGPIHFLPPHYFQILE 430 P P+ FL PHYF +++ Sbjct: 94 PKPLKFLRPHYFTLVK 109 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 24.2 bits (50), Expect = 9.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -3 Query: 343 MWHAYGQLCFSSSKLDLAQTTHHVLLK 263 MW + LC S ++ LA+ + ++LL+ Sbjct: 1505 MWIKFANLCRKSGRISLAKKSLNLLLE 1531 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 24.2 bits (50), Expect = 9.4 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 247 HSLYNILLYYQSAFEDHINYFYKYKTGQY 161 + + N + Y QSA+ + I+ +K GQY Sbjct: 372 YGITNDVAYLQSAYLEQISALQYWKQGQY 400 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,828,066 Number of Sequences: 5004 Number of extensions: 36511 Number of successful extensions: 70 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 70 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 166231220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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