Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0867
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964... 29 1.3
12_02_0635 - 21430245-21431156 28 3.0
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 7.0
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 27 7.0
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 27 9.2
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 27 9.2
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453 27 9.2
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 27 9.2
>04_04_1451 +
33695734-33695806,33695946-33696179,33696341-33696434,
33696532-33696749,33696859-33696992,33697098-33697325,
33697417-33697845
Length = 469
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -1
Query: 345 GCGTLTVNCASAQASWISPKLPITCY*SGLNNITVCIISYYIISPLSK 202
GCG L ++ + AQ W++ + + C+ + + I+ ++S+ SP S+
Sbjct: 40 GCGVLALSWSVAQLGWVAGPIAMVCF-AFVTYISAFLLSHCYRSPGSE 86
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 360 TPSRK--GCGTLTVNCASAQASWISPKLPITC 271
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
+ ++ E W G+L S+ KLD+A+
Sbjct: 566 IAIEAQSESKWRQLGELAMSTGKLDMAE 593
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
+ ++ E W G+L S+ KLD+A+
Sbjct: 561 IAIEAQSESKWRQLGELAMSTGKLDMAE 588
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -3
Query: 430 LKDLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYG---QLCFSSSKLDLAQTTHH--VLL 266
+ + +++W+ PG ++F L + WH G S++D A H+ +
Sbjct: 488 MNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIERSEIDNAAVIHYNGNMK 547
Query: 265 KWLE*HHSLYNILLYYQSAFEDHINYFYKYKTG 167
WLE + Y+ + +INY + Y G
Sbjct: 548 PWLE------IAMSKYRPYWTKYINYEHTYVRG 574
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
+ ++ E W G+L S+ KLD+A+
Sbjct: 656 IAMEAQSESKWKQLGELAMSTGKLDMAE 683
>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
Length = 494
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = -2
Query: 428 QGSESSVEEGNEWARVYELCDFGPRRGR-----DVARLRSIVLQLKQAGSRP 288
+G E+ +EWA + D GP D A + KQAG RP
Sbjct: 205 RGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQAGKRP 256
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 415 VVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLCFSSSKLDLAQTTHHVLLKWL 257
VV++ M +S ++L E G W + +L + + +DLA+ H + K+L
Sbjct: 375 VVYKGTMKDGPEVSVISLCAFE-GHWTSQHELFYQNKVIDLARLNHENIAKFL 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,960
Number of Sequences: 37544
Number of extensions: 235020
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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