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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0867
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    29   1.3  
12_02_0635 - 21430245-21431156                                         28   3.0  
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    27   7.0  
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611...    27   7.0  
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225...    27   9.2  
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    27   9.2  
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453     27   9.2  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    27   9.2  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 345 GCGTLTVNCASAQASWISPKLPITCY*SGLNNITVCIISYYIISPLSK 202
           GCG L ++ + AQ  W++  + + C+ + +  I+  ++S+   SP S+
Sbjct: 40  GCGVLALSWSVAQLGWVAGPIAMVCF-AFVTYISAFLLSHCYRSPGSE 86


>12_02_0635 - 21430245-21431156
          Length = 303

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 360 TPSRK--GCGTLTVNCASAQASWISPKLPITC 271
           TP R   GC  LT+ C+    S+ SP  P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303


>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
           + ++   E  W   G+L  S+ KLD+A+
Sbjct: 566 IAIEAQSESKWRQLGELAMSTGKLDMAE 593


>02_02_0016 -
           6118739-6118758,6119116-6119236,6119478-6119613,
           6119887-6119993,6120316-6120409,6120509-6120705,
           6121872-6121943,6122597-6122773,6122862-6122936,
           6123027-6123167,6123837-6124025,6124415-6124480,
           6124564-6124714,6125040-6125200,6126279-6126410,
           6126508-6126833,6126906-6126942,6127056-6127088,
           6127500-6127554,6127666-6127753,6127817-6127862
          Length = 807

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
           + ++   E  W   G+L  S+ KLD+A+
Sbjct: 561 IAIEAQSESKWRQLGELAMSTGKLDMAE 588


>06_03_1369 +
           29620958-29621030,29622421-29622452,29622538-29622598,
           29622695-29622711,29622916-29623250,29623329-29623686,
           29623784-29624371,29624664-29624939
          Length = 579

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -3

Query: 430 LKDLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYG---QLCFSSSKLDLAQTTHH--VLL 266
           + + +++W+     PG ++F  L    +  WH  G         S++D A   H+   + 
Sbjct: 488 MNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIERSEIDNAAVIHYNGNMK 547

Query: 265 KWLE*HHSLYNILLYYQSAFEDHINYFYKYKTG 167
            WLE        +  Y+  +  +INY + Y  G
Sbjct: 548 PWLE------IAMSKYRPYWTKYINYEHTYVRG 574


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
           + ++   E  W   G+L  S+ KLD+A+
Sbjct: 656 IAMEAQSESKWKQLGELAMSTGKLDMAE 683


>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
          Length = 494

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = -2

Query: 428 QGSESSVEEGNEWARVYELCDFGPRRGR-----DVARLRSIVLQLKQAGSRP 288
           +G     E+ +EWA    + D GP         D A     +   KQAG RP
Sbjct: 205 RGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQAGKRP 256


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 415 VVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLCFSSSKLDLAQTTHHVLLKWL 257
           VV++  M     +S ++L   E G W +  +L + +  +DLA+  H  + K+L
Sbjct: 375 VVYKGTMKDGPEVSVISLCAFE-GHWTSQHELFYQNKVIDLARLNHENIAKFL 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,960
Number of Sequences: 37544
Number of extensions: 235020
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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