Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0867
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)                   30   1.0  
SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)        29   2.3  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)                    28   3.1  
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_17787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)        28   4.1  
SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)                    27   5.4  
SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)                    27   5.4  
SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)                     27   7.2  
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)                   27   7.2  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   9.5  
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -2

Query: 401 GNEWARVYELCDFGPR---RGRDVARLRSIVLQLKQ 303
           G EW +V   CDF P+     +DV+R+RSI LQLKQ
Sbjct: 18  GTEWEKVCRACDFNPKATKNTKDVSRMRSIFLQLKQ 53


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +1

Query: 358 GPKSQSS*TRAHSFPSSTLLSDP*GG 435
           GP+++SS TR  SFPSS L+SD  GG
Sbjct: 470 GPRNKSSITRVASFPSS-LISDIFGG 494


>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
          Length = 443

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 210 LSKITLIIFINIRQANINNVQAKHN 136
           LSKI +I+F+NI Q  + N++ + N
Sbjct: 246 LSKIQMIVFVNILQLRVPNIEERFN 270


>SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)
          Length = 181

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -1

Query: 255 NNITVCIISYYIISPLSKITLIIFINIRQANINNVQAKHNSGLEPCYLLKLFCIYYVMAN 76
           ++ ++ I+  ++++ L  ++LI+ I I    I+     H  G+ P ++ KLFC+    AN
Sbjct: 40  SSTSIPILDVFLMATLVMVSLILMITIFVLVIH-----HKEGVPPPWIQKLFCVKPKPAN 94


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 258  LNNITVCIISYYIISPLSKITLIIFINIRQANINNVQAKHNSGLEPCYLLKL 103
            L  + + I S  I++PL+ I + IF +I+  +  N   +H S      LLKL
Sbjct: 2348 LRQLLIAIESAIIVAPLNFIIVFIFTHIKPRDRPNKSQRHYSVNRRRSLLKL 2399


>SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)
          Length = 332

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 264 SGLNNITVCIISYYIISPLSKITLIIFINI 175
           S +NN  + IIS YII   S I +II I+I
Sbjct: 277 SNINNCIIVIISIYIIIISSIIIIIIIISI 306


>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 433  PLKDLKVVWRKEMNGPGFMSFVT-LDPVEEGMWHAYGQLCFSSSKLDLAQT 284
            P+ D+  VW ++ +  G ++F+T      +G+ H YG +      L++  T
Sbjct: 891  PICDIHQVWTEQSHSRGAVNFITGAGGFLQGLLHGYGGVRVREDSLEINPT 941


>SB_17787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 258 LNNITVCIISYYIISPLSKITLIIFINIRQANINNV 151
           +NNI + II+  II  ++ I +II  NI    INN+
Sbjct: 52  INNIIIIIINNIIIIIINNIIIIIINNIIIIIINNI 87


>SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)
          Length = 200

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 255 NNITVCIISYYIISPLSKITLIIFINIRQANINNVQAKHNSGLEPCYLLKLFC 97
           ++ ++ I+  ++++ L  ++LI+ I I    I+     H  G+ P ++ KLFC
Sbjct: 61  SSTSIPILGVFLMATLVMVSLILMITIFVLVIH-----HKEGVPPTWIQKLFC 108


>SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)
          Length = 240

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -3

Query: 430 LKDLKVVWRKEM---NGPGFMSFVTLDPVEEGMWHAYGQL 320
           L D    WR  +   N PG    V LD ++ G W  + Q+
Sbjct: 184 LSDFPNTWRHTLDIYNMPGIADTVNLDHIKAGYWEGFPQV 223


>SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)
          Length = 421

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = -3

Query: 424 DLKVVWRKEMNGPGFMSFVT-------LDPVEEGMWHA 332
           D++V  +    GPG +S  T       L P+E+G WHA
Sbjct: 15  DVRVEGKAPSKGPGIISSTTNSSITLELKPIEKGHWHA 52


>SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)
          Length = 374

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 335 VPHPFLDGVQSHKAHKPGPIHFLPPHYFQILEG 433
           +P P+L  +  HK+ KP    FL    F  L+G
Sbjct: 23  LPRPYLPALPPHKSTKPSYSRFLVEAPFTALQG 55


>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 311

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 430 LKDLKVVWRKEMNGPGFMSFVTLDPVEEGMW 338
           L D  V   +E   PG  ++ TLDP  EGM+
Sbjct: 118 LNDCFVKMPREPGNPGKGNYWTLDPASEGMF 148


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 359  PRRGRDVARLRSIVLQLKQAGSRPNYPSR 273
            PRRGRD++R R+ + +L     +P    R
Sbjct: 2084 PRRGRDISRNRNPIARLVNVSLKPGPDGR 2112


>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 90  SKYKIISINNKALNHYC 140
           S+YKII I+N+  NH+C
Sbjct: 456 SQYKIIFIHNQNHNHFC 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,475
Number of Sequences: 59808
Number of extensions: 266556
Number of successful extensions: 680
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)