Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0867
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   4.8  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   4.8  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   4.8  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   4.8  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    27   6.3  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    27   6.3  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 424  DLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 284
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 424  DLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 284
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 424  DLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 284
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 424  DLKVVWRKEMNGPGFMSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 284
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 155 LLILACLIFIKIINVIFESGLII**DIIQ 241
           +L LACL FI+I  VIF   +I   DI++
Sbjct: 32  VLTLACLTFIQINTVIFNFTVICMEDIVE 60


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 155 LLILACLIFIKIINVIFESGLII**DIIQ 241
           +L LACL FI+I  VIF   +I   DI++
Sbjct: 32  VLTLACLTFIQINTVIFNFTVICMEDIVE 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,014
Number of Sequences: 27780
Number of extensions: 210049
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)