Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0867
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60640.2 68418.m07611 thioredoxin family protein similar to p...    29   1.9  
At5g60640.1 68418.m07610 thioredoxin family protein similar to p...    29   1.9  
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic...    28   3.4  
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ...    27   4.4  
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    27   7.7  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    27   7.7  

>At5g60640.2 68418.m07611 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 536

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 442 TGPPLKDLKVVWRKEMNGPGFMSFVTLDPVEE 347
           TG   K+  V W K+  GPG  +  TLD  E+
Sbjct: 191 TGGRTKETIVTWVKKKIGPGVYNLTTLDDAEK 222


>At5g60640.1 68418.m07610 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 597

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 442 TGPPLKDLKVVWRKEMNGPGFMSFVTLDPVEE 347
           TG   K+  V W K+  GPG  +  TLD  E+
Sbjct: 191 TGGRTKETIVTWVKKKIGPGVYNLTTLDDAEK 222


>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
           to dynamin like protein 2a (ADL2a) [Arabidopsis
           thaliana] GI:19032337; supported by cDNA gi:19032336
          Length = 808

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 368 DFGPRRGRDVARLRSIVLQLKQAGSRPN 285
           DF PR G D+   R +VLQL Q  SR N
Sbjct: 83  DFLPR-GNDICTRRPLVLQLLQTKSRAN 109


>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
           [Homo sapiens]; similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
           musculus]
          Length = 920

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 370 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 287
           + ++   E  W   G+L  SS KLD+A+
Sbjct: 660 IAVEAQNESKWKQLGELAMSSGKLDMAE 687


>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 341  HPFLDGVQSHKAHKPGPIHFLPP 409
            HP+L  + S + +   P HFLPP
Sbjct: 1045 HPYLSQLHSEEVNNIIPKHFLPP 1067


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 341  HPFLDGVQSHKAHKPGPIHFLPP 409
            HP+L  + S + +   P HFLPP
Sbjct: 1045 HPYLSQLHSEEVNNIIPKHFLPP 1067


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,278
Number of Sequences: 28952
Number of extensions: 191454
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)