Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0864
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      31   0.19 
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    28   1.3  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   1.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.3  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.3  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.0  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.2  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -3

Query: 561  IRRLIQPILSVHKEKSSFDPYNFSYSTHGSGRICAGYFPSKFKNKLFM*VGSLIKTSFVF 382
            +R+L Q  L    +     PY   Y+          YFP+  K ++F  +G  +  ++V 
Sbjct: 982  LRKLCQSFLVALSKNIENIPYALCYTAAQLKNSLQRYFPAAHKEEIFGVIGKFVYWAYVA 1041

Query: 381  PVNLS 367
            PV +S
Sbjct: 1042 PVLVS 1046


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 314 NLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPT 415
           +L+KYI + H +L PI YE        +F S+P+
Sbjct: 130 DLNKYIPLSHLKLPPIVYEFDRNVEPAIFPSNPS 163


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 164 NGRHRRETMHF*IKEDPDISNHFNKPRTQ 78
           NG H+    H   KE   I  HF KPR Q
Sbjct: 453 NGVHKSVVKHLDEKETWSIKYHFRKPRDQ 481


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 365  YERLTGKTKLVFISDPTHMKSLFLNLEGKYPAHILP 472
            Y  L    KLV+  + T   S+F  ++G Y A ILP
Sbjct: 908  YSALKDPEKLVY--ETTSENSIFFEVDGPYRAMILP 941


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 138 HRFPSMSSIRSAVRSRNSNRCSMSTKPH-KSLRTIDEMPHRNHYQS*EQNL 287
           H+   +   +S+  S+N +  S S K   +S++ +DE  H NH  +  QN+
Sbjct: 37  HKSEHVEVSQSSSDSKNVDGRSTSEKRKVESVKLVDESKHNNHDDTGTQNV 87


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 153 MSSIRSAVR-SRNSNRCSMSTKPHKSLRTIDEM 248
           +SS  S++  SRN +R  MS KP+K    +DE+
Sbjct: 172 ISSNHSSMHISRNDSRNYMSEKPNKDQSWLDEL 204


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 155 HRRETMHF*IKEDPDISNHFNKPRTQCGNGSWK 57
           H  ET    +K DP I++ F +   +CG GS K
Sbjct: 158 HLEETQ---VKFDPSITDEFLEAYVRCGEGSDK 187


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 177 RSRNSNRCSMSTKPHKSLRTIDEMPHRNHYQS*EQNLTYFLQVEEK 314
           +  N+N      K +K L T D    ++++   ++++ YF  ++EK
Sbjct: 641 KEANNNGRGWKIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEK 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,533
Number of Sequences: 5004
Number of extensions: 62687
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)