Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0864
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781...    35   0.047
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877...    33   0.19 
12_01_0259 - 1905291-1905393,1905536-1905672,1905787-1905893,190...    32   0.44 
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199...    32   0.44 
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741...    30   1.8  
10_08_0271 - 16382655-16384451                                         28   7.2  
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23...    28   7.2  

>04_04_0848 -
           28677545-28677635,28677760-28677887,28678020-28678126,
           28678242-28678320,28678426-28678515,28678603-28678854,
           28680351-28680497,28680711-28681035,28681177-28681406
          Length = 482

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
           PIIG  F  F A    ++  Y   R ++ GP+F   L G+  ++ + DP   + +F   E
Sbjct: 50  PIIGETFQFFRASPSIDMPSYYKQRLERYGPLFKTSLVGRPVIISL-DPEVNRFIF-QQE 107

Query: 446 GKYPAHILPE 475
           GK      PE
Sbjct: 108 GKLFQSWYPE 117


>07_03_0391 -
           17587144-17587323,17587460-17587566,17587664-17587742,
           17587850-17587939,17588337-17588588,17588748-17588894,
           17589071-17589246,17589303-17589394,17589582-17589673
          Length = 404

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
           P++G  F  F A    ++  Y   R ++ GP+F   L G+  LV   DP   + +F   E
Sbjct: 4   PVVGETFQFFRASPSVDMPSYYKQRLERYGPLFKTSLVGQ-PLVVSLDPEVNRFIFQQEE 62

Query: 446 GKYPAHI 466
              P H+
Sbjct: 63  ---PHHV 66


>12_01_0259 -
           1905291-1905393,1905536-1905672,1905787-1905893,
           1906012-1906090,1906256-1906342,1906987-1907265,
           1907401-1908114
          Length = 501

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 263 LPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNL 442
           LP+IG    L SA    N   +ID R  + G +F   + G+ + VF +DP     L L  
Sbjct: 49  LPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGE-RTVFSADPA-FNRLLLAA 106

Query: 443 EGK 451
           EG+
Sbjct: 107 EGR 109


>11_01_0261 -
           1989988-1990090,1990232-1990368,1990483-1990589,
           1990708-1990786,1990952-1991038,1991688-1991966,
           1992109-1992822
          Length = 501

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 263 LPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNL 442
           LP+IG    L SA    N   +ID R  + G +F   + G+ + VF +DP     L L  
Sbjct: 49  LPLIGETLRLISAYKTPNPEPFIDERVARHGGVFTTHVFGE-RTVFSADPA-FNRLLLAA 106

Query: 443 EGK 451
           EG+
Sbjct: 107 EGR 109


>11_03_0126 +
           10371536-10371596,10372467-10372544,10373968-10374127,
           10374286-10374610,10374708-10374860,10374985-10375236,
           10375356-10375445,10375543-10375621,10375712-10375818,
           10375921-10376048,10376329-10376419
          Length = 507

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
           PI+G  F  F      ++  Y   R ++ GPIF   + G+  +V   DP  +       E
Sbjct: 73  PIVGETFQFFRTSPSIDMPIYYKRRLERYGPIFKTNIGGQ-HVVISLDP-EVNQFIFQQE 130

Query: 446 GKYPAHILPE 475
           GK      PE
Sbjct: 131 GKLFQSWFPE 140


>10_08_0271 - 16382655-16384451
          Length = 598

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 246 SHLWYVEIYEA*LTLNIDYCYDS 178
           S LW++ +  A +TL + +CYDS
Sbjct: 16  SRLWFMVVLSATVTLLVRHCYDS 38


>09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-236292,
            236508-236636,237516-237589,237836-237968,239366-239584,
            239671-239756,239843-241107,241304-241640,242548-242862,
            243614-243697,243776-243883,243981-244079
          Length = 1175

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 91   LLKWLLISGSSLI*-KCIVSRR--CLPLDRLLGVVTVIDVQCQLSL 219
            L  W L SG  L   +C  S R  C+ +D   GVV V D  CQL L
Sbjct: 1110 LYAWELSSGRKLAGTQCFNSGRVSCVAVDAKSGVVAVADDGCQLVL 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,868
Number of Sequences: 37544
Number of extensions: 361232
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)