BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0864 (638 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05 SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05 SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19) 36 0.037 SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049 SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6) 30 1.4 SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) 29 2.4 SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_1738| Best HMM Match : p450 (HMM E-Value=0) 29 4.2 SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_1760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_39637| Best HMM Match : SAA (HMM E-Value=5.5) 28 7.4 SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 388 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/67 (41%), Positives = 34/67 (50%) Frame = +2 Query: 257 KSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436 K LP IG+ D GG LH K+ GPI+ + L G T V ISDP + + Sbjct: 66 KGLPWIGSIHDYILKGGFSKLHLLRQSYFKRYGPIYKDHLMG-TTTVNISDPEEITKVIR 124 Query: 437 NLEGKYP 457 N EGKYP Sbjct: 125 N-EGKYP 130 >SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 758 Score = 45.6 bits (103), Expect = 3e-05 Identities = 28/67 (41%), Positives = 34/67 (50%) Frame = +2 Query: 257 KSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436 K LP IG+ GG LH K+ GPI+ + L G T V ISDP + +F Sbjct: 13 KGLPWIGSIHGYILKGGVSKLHLLHQSYFKKYGPIYKDHLMG-TTTVSISDPEDIAKVFR 71 Query: 437 NLEGKYP 457 N EGKYP Sbjct: 72 N-EGKYP 77 >SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19) Length = 461 Score = 35.5 bits (78), Expect = 0.037 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +2 Query: 260 SLPIIGTKFDLFSAGGG-KNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436 +LP +G+ S G K + + + GPI+ E L G+T V I P + +F Sbjct: 52 ALPYVGSVHRYMSEKDGFKKMFRVQKKLFDEYGPIYKENLFGRTS-VNILYPAESEKVF- 109 Query: 437 NLEGKYPAHILPEPWVLYEK 496 EGKYP+ + W Y + Sbjct: 110 RAEGKYPSRPYVKAWKKYRE 129 >SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1162 Score = 35.1 bits (77), Expect = 0.049 Identities = 26/82 (31%), Positives = 40/82 (48%) Frame = +2 Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445 P+ G D+ AG +LH+Y+ + HK GP+ + G +V ++DPT K L + Sbjct: 49 PVNGNLLDVKKAG---SLHEYLLLLHKTYGPV-ASFMWGTINVVSVADPTLWKELRSLFD 104 Query: 446 GKYPAHILPEPWVLYEKLYGSK 511 PE + L+E L G K Sbjct: 105 RP------PELFKLFEPLIGKK 120 >SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6) Length = 195 Score = 30.3 bits (65), Expect = 1.4 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Frame = +3 Query: 69 VAALCSRFIKVVTYIRILFNLKMHRFP-----SMSSIRSAVRSRNSNRCSMSTKPHKSLR 233 V CS+ + VV + +++ N +H + S SS+ +A + R S HK L+ Sbjct: 84 VGVSCSKVVLVVIFHKMVPNHTVHTYAILDKQSDSSLHAAKQERKDKETSPLVDDHKLLK 143 Query: 234 TIDEMPHRNHYQS*EQNLTY 293 ++ H+N ++ E L + Sbjct: 144 IMEVGIHKNALRNWEMPLPF 163 >SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) Length = 239 Score = 29.5 bits (63), Expect = 2.4 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +3 Query: 39 NKISFSFPGTVAALCSRFIKVVTYIRILFNLKMHRFPSMSSIRSAVRSRNSNRC 200 NKIS F GT+ C R + V +L + H F + ++S SRN C Sbjct: 81 NKISPIFEGTITT-CVRLMTVDLSRNLLKRVFKHYFSGLEDLKSVNLSRNVIEC 133 >SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 136 Score = 28.7 bits (61), Expect = 4.2 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +2 Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445 P IG ++ GG LHK + + ++ Y+ G+ + +SDP +K + L Sbjct: 37 PYIGNLLEVGKYGG---LHK-MQLHFSKIYGRVYKLFIGRAPTIVVSDPEIIKQILLKEF 92 Query: 446 GKYP 457 K+P Sbjct: 93 NKFP 96 >SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 152 Score = 28.7 bits (61), Expect = 4.2 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +2 Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445 P IG ++ GG LHK + + ++ Y+ G+ + +SDP +K + L Sbjct: 53 PYIGNLLEVGKYGG---LHK-MQLHFSKIYGRVYKLFIGRAPTIVVSDPEIIKQILLKEF 108 Query: 446 GKYP 457 K+P Sbjct: 109 NKFP 112 >SB_1738| Best HMM Match : p450 (HMM E-Value=0) Length = 484 Score = 28.7 bits (61), Expect = 4.2 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +2 Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445 P IG D+ GG +HK + K G + ++ G+ + +SDP +K + + Sbjct: 37 PYIGNLLDVKKHGG---MHKMLMHYFKAYGRV-HKMFIGRAAAIVVSDPEIVKQIVIKEF 92 Query: 446 GKYP 457 K+P Sbjct: 93 HKFP 96 >SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 382 Score = 28.7 bits (61), Expect = 4.2 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = +2 Query: 446 GKYPAHILPEPWVLYEKLYGSKEDFSLWTERIGWINRRIMNKHLPQRRFRCMVTEPPIRT 625 G HI P P V Y YG +L + + RR + KH R F M+T P I+ Sbjct: 304 GMVVPHIRPSPLVTYSSCYG-----ALPNGKARHLLRRSVAKHKSARTFFVMIT-PEIKV 357 Query: 626 A 628 A Sbjct: 358 A 358 >SB_1760| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 199 Score = 28.3 bits (60), Expect = 5.6 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +1 Query: 451 ISGT--YSTRTVGTXXXXXXXXXGLFFMDGEDWLD*STNYEQTSTS 582 +SGT Y+T T GT G +F DG WL +T QTSTS Sbjct: 51 LSGTMVYNTATAGTSPNNVIP--GFYFWDGSKWLRVTT---QTSTS 91 >SB_39637| Best HMM Match : SAA (HMM E-Value=5.5) Length = 195 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/37 (32%), Positives = 15/37 (40%) Frame = +2 Query: 407 DPTHMKSLFLNLEGKYPAHILPEPWVLYEKLYGSKED 517 DP + F L G Y A I W LY ++D Sbjct: 114 DPRYSNDTFQTLRGNYSASISAGAWTLYSMKNSDEQD 150 >SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4275 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +3 Query: 444 KENIRHIFYQNRGYYMKNYTDQKRTFLYGRRGL 542 K++++HIFY +G + T +R +LY RGL Sbjct: 1137 KKSLKHIFYGEKGKFPLKGTYTER-YLYEMRGL 1168 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,677,146 Number of Sequences: 59808 Number of extensions: 440047 Number of successful extensions: 1006 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1005 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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