Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0864
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19) 36 0.037
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6) 30 1.4
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) 29 2.4
SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_1738| Best HMM Match : p450 (HMM E-Value=0) 29 4.2
SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_1760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39637| Best HMM Match : SAA (HMM E-Value=5.5) 28 7.4
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/67 (41%), Positives = 34/67 (50%)
Frame = +2
Query: 257 KSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436
K LP IG+ D GG LH K+ GPI+ + L G T V ISDP + +
Sbjct: 66 KGLPWIGSIHDYILKGGFSKLHLLRQSYFKRYGPIYKDHLMG-TTTVNISDPEEITKVIR 124
Query: 437 NLEGKYP 457
N EGKYP
Sbjct: 125 N-EGKYP 130
>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 758
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/67 (41%), Positives = 34/67 (50%)
Frame = +2
Query: 257 KSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436
K LP IG+ GG LH K+ GPI+ + L G T V ISDP + +F
Sbjct: 13 KGLPWIGSIHGYILKGGVSKLHLLHQSYFKKYGPIYKDHLMG-TTTVSISDPEDIAKVFR 71
Query: 437 NLEGKYP 457
N EGKYP
Sbjct: 72 N-EGKYP 77
>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
Length = 461
Score = 35.5 bits (78), Expect = 0.037
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 SLPIIGTKFDLFSAGGG-KNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFL 436
+LP +G+ S G K + + + GPI+ E L G+T V I P + +F
Sbjct: 52 ALPYVGSVHRYMSEKDGFKKMFRVQKKLFDEYGPIYKENLFGRTS-VNILYPAESEKVF- 109
Query: 437 NLEGKYPAHILPEPWVLYEK 496
EGKYP+ + W Y +
Sbjct: 110 RAEGKYPSRPYVKAWKKYRE 129
>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 35.1 bits (77), Expect = 0.049
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +2
Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
P+ G D+ AG +LH+Y+ + HK GP+ + G +V ++DPT K L +
Sbjct: 49 PVNGNLLDVKKAG---SLHEYLLLLHKTYGPV-ASFMWGTINVVSVADPTLWKELRSLFD 104
Query: 446 GKYPAHILPEPWVLYEKLYGSK 511
PE + L+E L G K
Sbjct: 105 RP------PELFKLFEPLIGKK 120
>SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6)
Length = 195
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 69 VAALCSRFIKVVTYIRILFNLKMHRFP-----SMSSIRSAVRSRNSNRCSMSTKPHKSLR 233
V CS+ + VV + +++ N +H + S SS+ +A + R S HK L+
Sbjct: 84 VGVSCSKVVLVVIFHKMVPNHTVHTYAILDKQSDSSLHAAKQERKDKETSPLVDDHKLLK 143
Query: 234 TIDEMPHRNHYQS*EQNLTY 293
++ H+N ++ E L +
Sbjct: 144 IMEVGIHKNALRNWEMPLPF 163
>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
Length = 239
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 39 NKISFSFPGTVAALCSRFIKVVTYIRILFNLKMHRFPSMSSIRSAVRSRNSNRC 200
NKIS F GT+ C R + V +L + H F + ++S SRN C
Sbjct: 81 NKISPIFEGTITT-CVRLMTVDLSRNLLKRVFKHYFSGLEDLKSVNLSRNVIEC 133
>SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
P IG ++ GG LHK + + ++ Y+ G+ + +SDP +K + L
Sbjct: 37 PYIGNLLEVGKYGG---LHK-MQLHFSKIYGRVYKLFIGRAPTIVVSDPEIIKQILLKEF 92
Query: 446 GKYP 457
K+P
Sbjct: 93 NKFP 96
>SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
P IG ++ GG LHK + + ++ Y+ G+ + +SDP +K + L
Sbjct: 53 PYIGNLLEVGKYGG---LHK-MQLHFSKIYGRVYKLFIGRAPTIVVSDPEIIKQILLKEF 108
Query: 446 GKYP 457
K+P
Sbjct: 109 NKFP 112
>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
Length = 484
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 266 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLE 445
P IG D+ GG +HK + K G + ++ G+ + +SDP +K + +
Sbjct: 37 PYIGNLLDVKKHGG---MHKMLMHYFKAYGRV-HKMFIGRAAAIVVSDPEIVKQIVIKEF 92
Query: 446 GKYP 457
K+P
Sbjct: 93 HKFP 96
>SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +2
Query: 446 GKYPAHILPEPWVLYEKLYGSKEDFSLWTERIGWINRRIMNKHLPQRRFRCMVTEPPIRT 625
G HI P P V Y YG +L + + RR + KH R F M+T P I+
Sbjct: 304 GMVVPHIRPSPLVTYSSCYG-----ALPNGKARHLLRRSVAKHKSARTFFVMIT-PEIKV 357
Query: 626 A 628
A
Sbjct: 358 A 358
>SB_1760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 ISGT--YSTRTVGTXXXXXXXXXGLFFMDGEDWLD*STNYEQTSTS 582
+SGT Y+T T GT G +F DG WL +T QTSTS
Sbjct: 51 LSGTMVYNTATAGTSPNNVIP--GFYFWDGSKWLRVTT---QTSTS 91
>SB_39637| Best HMM Match : SAA (HMM E-Value=5.5)
Length = 195
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 407 DPTHMKSLFLNLEGKYPAHILPEPWVLYEKLYGSKED 517
DP + F L G Y A I W LY ++D
Sbjct: 114 DPRYSNDTFQTLRGNYSASISAGAWTLYSMKNSDEQD 150
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 444 KENIRHIFYQNRGYYMKNYTDQKRTFLYGRRGL 542
K++++HIFY +G + T +R +LY RGL
Sbjct: 1137 KKSLKHIFYGEKGKFPLKGTYTER-YLYEMRGL 1168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,677,146
Number of Sequences: 59808
Number of extensions: 440047
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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