Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0864
(638 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 23 6.2
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 23 6.2
AY341217-1|AAR13781.1| 200|Anopheles gambiae SRPN10 protein. 23 8.2
AY341216-1|AAR13780.1| 200|Anopheles gambiae SRPN10 protein. 23 8.2
AF043443-1|AAC05668.1| 232|Anopheles gambiae putative pupal-spe... 23 8.2
AF043442-1|AAC05667.1| 231|Anopheles gambiae putative pupal-spe... 23 8.2
AF043441-1|AAC05666.1| 231|Anopheles gambiae putative pupal-spe... 23 8.2
AF043440-1|AAC05665.1| 234|Anopheles gambiae putative pupal-spe... 23 8.2
AF043439-1|AAC05664.1| 239|Anopheles gambiae putative pupal-spe... 23 8.2
AF043438-1|AAC05663.1| 231|Anopheles gambiae putative pupal-spe... 23 8.2
AF043437-1|AAC05662.1| 239|Anopheles gambiae putative pupal-spe... 23 8.2
AF043436-1|AAC05661.1| 263|Anopheles gambiae putative pupal-spe... 23 8.2
AF043435-1|AAC05660.1| 231|Anopheles gambiae pupal-specific cut... 23 8.2
AF043434-1|AAC05659.1| 232|Anopheles gambiae putative pupal-spe... 23 8.2
AF043433-3|AAC05658.1| 231|Anopheles gambiae putative pupal-spe... 23 8.2
AF043433-2|AAC05657.1| 239|Anopheles gambiae putative pupal-spe... 23 8.2
AF043433-1|AAC05656.1| 231|Anopheles gambiae putative pupal-spe... 23 8.2
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 23 8.2
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 23.4 bits (48), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 317 LHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLEGKYP 457
L +YI++R+K+ I L G F+S ++L L+ ++P
Sbjct: 546 LGQYIEVRNKKWSGIVETALGGCLSAFFVSTQEDWRTLDALLKREFP 592
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 23.4 bits (48), Expect = 6.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 295 FCRWRKKLTQIYRHASQAIRTYILREINRKDKTCL 399
F R R ++ I R + R N +DK CL
Sbjct: 605 FRRGRSTISAIQRVVDAGTAAKLFRRTNTRDKRCL 639
>AY341217-1|AAR13781.1| 200|Anopheles gambiae SRPN10 protein.
Length = 200
Score = 23.0 bits (47), Expect = 8.2
Identities = 7/30 (23%), Positives = 15/30 (50%)
Frame = -1
Query: 128 IKEDPDISNHFNKPRTQCGNGSWKTKRDFI 39
+ P+I+NH ++P+ + S F+
Sbjct: 29 LSTQPEITNHLDRPKVTMADNSSSLDAQFV 58
>AY341216-1|AAR13780.1| 200|Anopheles gambiae SRPN10 protein.
Length = 200
Score = 23.0 bits (47), Expect = 8.2
Identities = 7/30 (23%), Positives = 15/30 (50%)
Frame = -1
Query: 128 IKEDPDISNHFNKPRTQCGNGSWKTKRDFI 39
+ P+I+NH ++P+ + S F+
Sbjct: 29 LSTQPEITNHLDRPKVTMADNSSSLDAQFV 58
>AF043443-1|AAC05668.1| 232|Anopheles gambiae putative
pupal-specific cuticular proteinCP2d protein.
Length = 232
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 71 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 99
>AF043442-1|AAC05667.1| 231|Anopheles gambiae putative
pupal-specific cuticular proteinCP2c protein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043441-1|AAC05666.1| 231|Anopheles gambiae putative
pupal-specific cuticular proteinCP2b protein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043440-1|AAC05665.1| 234|Anopheles gambiae putative
pupal-specific cuticular proteinCP2d protein.
Length = 234
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043439-1|AAC05664.1| 239|Anopheles gambiae putative
pupal-specific cuticular proteinCP2b protein.
Length = 239
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 71 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 99
>AF043438-1|AAC05663.1| 231|Anopheles gambiae putative
pupal-specific cuticular proteinCP2b protein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043437-1|AAC05662.1| 239|Anopheles gambiae putative
pupal-specific cuticular proteinCP2b protein.
Length = 239
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 71 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 99
>AF043436-1|AAC05661.1| 263|Anopheles gambiae putative
pupal-specific cuticular proteinCP2c protein.
Length = 263
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 95 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 123
>AF043435-1|AAC05660.1| 231|Anopheles gambiae pupal-specific
cuticular protein CP2b protein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043434-1|AAC05659.1| 232|Anopheles gambiae putative
pupal-specific cuticular proteinCP2d protein.
Length = 232
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 71 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 99
>AF043433-3|AAC05658.1| 231|Anopheles gambiae putative
pupal-specific cuticular proteinprotein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AF043433-2|AAC05657.1| 239|Anopheles gambiae putative
pupal-specific cuticular proteinprotein.
Length = 239
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 71 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 99
>AF043433-1|AAC05656.1| 231|Anopheles gambiae putative
pupal-specific cuticular proteinprotein.
Length = 231
Score = 23.0 bits (47), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 564 IIRRLIQPILSVHKEKSSFDPYNFSYSTH 478
I++ + QP + E + Y FSYS H
Sbjct: 63 IVKTIAQPTIIKSVEHHAPANYEFSYSVH 91
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 23.0 bits (47), Expect = 8.2
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 295 FCRWRKKLTQIYRHASQAIRTYILREINRKDKTCL 399
F R R + I R R R N +DK CL
Sbjct: 544 FRRGRSTFSAIQRVVDAGRRAKSFRRTNHRDKRCL 578
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,576
Number of Sequences: 2352
Number of extensions: 14277
Number of successful extensions: 49
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -