Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0864
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.6  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 105 TYIRILFNLKMHRFPSMSS 161
           T++R+L +L MH +P + S
Sbjct: 126 TFLRVLLHLAMHDYPPLVS 144


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 105 TYIRILFNLKMHRFPSMSS 161
           T++R+L +L MH +P + S
Sbjct: 94  TFLRVLLHLAMHDYPPLVS 112


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 147 PSMSSIRSAVRSRNSNRCSMSTKPH-KSLR 233
           P  S+  + VR+  ++ CS++  PH K LR
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 97  LINREHNAATVPGKLNEILFYSAKP 23
           + N E +   VPGK NEI +Y+  P
Sbjct: 192 ITNGEWDLLGVPGKRNEI-YYNCCP 215


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 361 ILREINRKDKTCLY-QRPNSHE 423
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 361 ILREINRKDKTCLY-QRPNSHE 423
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 97  KWLLISGSSLI*KCIVSRR 153
           KWL I+ S+   +C+  RR
Sbjct: 72  KWLSINHSACAIRCLAQRR 90


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 107 SNHFNKPRTQCGNGSWKTKRDFIL 36
           S+ F + +T    G W +K +FIL
Sbjct: 7   SSAFKEIKTLPDRGMWSSKIEFIL 30


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 107 SNHFNKPRTQCGNGSWKTKRDFIL 36
           S+ F + +T    G W +K +FIL
Sbjct: 60  SSAFKEIKTLPDRGMWSSKIEFIL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,900
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)