BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0863 (671 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.3 SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 26 4.3 SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 5.7 SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.5 SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 7.5 SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 25 7.5 SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.5 >SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1073 Score = 26.2 bits (55), Expect = 4.3 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 Query: 664 KNGCVAGMSCVVSGAVLLDDSIEAVVVVSGVLNLAH 557 K+GC+ M S LL+ + V+SG++N H Sbjct: 398 KSGCLVTMRYGCSSTTLLEAILTEGAVLSGIINSNH 433 >SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 461 Score = 26.2 bits (55), Expect = 4.3 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -3 Query: 591 WWSSA--VYSTLRTEPSASNKVYSPCTASPRGTRAETCCRHC 472 WWS++ ++++ S K YSP T S + + R C Sbjct: 396 WWSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRSC 437 >SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosaccharomyces pombe|chr 2|||Manual Length = 421 Score = 25.8 bits (54), Expect = 5.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 388 PTKYLSPATMKKNMLTLNTTSLTPWLTDTVATTSLSTSP 504 P+K T + N + + S+TP+L T + LS+SP Sbjct: 253 PSKQAIMGTRQPNATSGSPLSVTPFLQKTSTSIGLSSSP 291 >SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 178 Score = 25.4 bits (53), Expect = 7.5 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 397 YLSPATMKKNMLTLNTTSL 453 Y+S AT+K N+L+LNT ++ Sbjct: 93 YVSEATLKGNVLSLNTFNI 111 >SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces pombe|chr 3|||Manual Length = 286 Score = 25.4 bits (53), Expect = 7.5 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +3 Query: 411 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESREATL 518 HH +Y H +D + D HS D+ S S A L Sbjct: 17 HHTHDYDHHNHD--HHGHDHHSHDSSSNSSSEAARL 50 >SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 520 Score = 25.4 bits (53), Expect = 7.5 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +2 Query: 509 GDAVHGEYTLLEADGS 556 GD++HG Y++LE G+ Sbjct: 403 GDSIHGLYSILETSGA 418 >SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1131 Score = 25.4 bits (53), Expect = 7.5 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = +1 Query: 379 SLQPTKYLSPATMKKNMLTLNTTSLT--PWLTDTVATTSLSTS 501 S +P + S +T+ +++ ++NT SLT P + + +TTS TS Sbjct: 953 STEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTS 995 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,857,225 Number of Sequences: 5004 Number of extensions: 27734 Number of successful extensions: 98 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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