Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0863
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503...    30   1.5  
08_01_0303 + 2493388-2493954                                           29   2.6  
08_01_0337 - 2994086-2995489                                           29   3.4  
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053...    29   4.5  
11_06_0577 - 25158833-25162864                                         28   7.8  

>04_04_1541 +
           34249778-34249882,34249964-34250115,34250225-34250350,
           34251868-34252030,34252601-34252678,34252749-34252847,
           34253045-34253188,34253344-34253446,34255303-34255646,
           34255727-34255891
          Length = 492

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 564 LRTEPSASNKV-YSPCTASPRGTRAETCCRHCVRQPRSKR 448
           +  EPS S K+ Y P    P+G+R E  CR  +R P  +R
Sbjct: 388 VENEPSLSAKLNYPPLPEEPKGSR-ELLCRVAIRLPDGRR 426


>08_01_0303 + 2493388-2493954
          Length = 188

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 115 RCSERRRPQPTSNVVRVRDLQWPLLVQC 32
           RCS RRRP P +  V +   + P  V+C
Sbjct: 30  RCSRRRRPSPLTTTVALTRRRSPAAVRC 57


>08_01_0337 - 2994086-2995489
          Length = 467

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 525 PCTASPRGTRAETCCRHCVRQPRSKRSRI*GE 430
           P    PR  R  T C  C R PR +R R  G+
Sbjct: 118 PAGPPPRVLRRATLCARCPRLPRPRRGRCSGD 149


>04_03_0795 -
           19704354-19704464,19705152-19705214,19705298-19705378,
           19705468-19705623,19705711-19705785,19706477-19706587,
           19707206-19707304,19707453-19707546,19707779-19707838,
           19709262-19709334,19711448-19711490,19711533-19711606,
           19711985-19712075,19712170-19712214,19712533-19712589,
           19713440-19713544,19713817-19713932,19714625-19714634,
           19714810-19714920,19715502-19715594,19715664-19715690,
           19715736-19715798,19716326-19716451,19716812-19716949,
           19717164-19717832,19717949-19718123,19718269-19718450
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +3

Query: 15  QNCCFKHCTSSG------HCRSLTRTTLLVGCGRLLSEHRPS 122
           Q   + HCT  G       C+ LT +  L GC  LL EHR S
Sbjct: 119 QEGLYVHCTLDGVLESNWACQLLTESMTLFGCMALLMEHRIS 160


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 412 TMKKNMLTLNTTSLTPWLTDTVATTSLSTSPARRRCARRIH 534
           T+ +  LT       PWL      T LST P R R A++IH
Sbjct: 78  TLYRRDLTPPEPGFWPWLRHV--PTWLSTVPTRHRLAKKIH 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,669
Number of Sequences: 37544
Number of extensions: 223094
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)