BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0863 (671 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 30 1.5 08_01_0303 + 2493388-2493954 29 2.6 08_01_0337 - 2994086-2995489 29 3.4 04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 29 4.5 11_06_0577 - 25158833-25162864 28 7.8 >04_04_1541 + 34249778-34249882,34249964-34250115,34250225-34250350, 34251868-34252030,34252601-34252678,34252749-34252847, 34253045-34253188,34253344-34253446,34255303-34255646, 34255727-34255891 Length = 492 Score = 30.3 bits (65), Expect = 1.5 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -3 Query: 564 LRTEPSASNKV-YSPCTASPRGTRAETCCRHCVRQPRSKR 448 + EPS S K+ Y P P+G+R E CR +R P +R Sbjct: 388 VENEPSLSAKLNYPPLPEEPKGSR-ELLCRVAIRLPDGRR 426 >08_01_0303 + 2493388-2493954 Length = 188 Score = 29.5 bits (63), Expect = 2.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 115 RCSERRRPQPTSNVVRVRDLQWPLLVQC 32 RCS RRRP P + V + + P V+C Sbjct: 30 RCSRRRRPSPLTTTVALTRRRSPAAVRC 57 >08_01_0337 - 2994086-2995489 Length = 467 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 525 PCTASPRGTRAETCCRHCVRQPRSKRSRI*GE 430 P PR R T C C R PR +R R G+ Sbjct: 118 PAGPPPRVLRRATLCARCPRLPRPRRGRCSGD 149 >04_03_0795 - 19704354-19704464,19705152-19705214,19705298-19705378, 19705468-19705623,19705711-19705785,19706477-19706587, 19707206-19707304,19707453-19707546,19707779-19707838, 19709262-19709334,19711448-19711490,19711533-19711606, 19711985-19712075,19712170-19712214,19712533-19712589, 19713440-19713544,19713817-19713932,19714625-19714634, 19714810-19714920,19715502-19715594,19715664-19715690, 19715736-19715798,19716326-19716451,19716812-19716949, 19717164-19717832,19717949-19718123,19718269-19718450 Length = 1015 Score = 28.7 bits (61), Expect = 4.5 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%) Frame = +3 Query: 15 QNCCFKHCTSSG------HCRSLTRTTLLVGCGRLLSEHRPS 122 Q + HCT G C+ LT + L GC LL EHR S Sbjct: 119 QEGLYVHCTLDGVLESNWACQLLTESMTLFGCMALLMEHRIS 160 >11_06_0577 - 25158833-25162864 Length = 1343 Score = 27.9 bits (59), Expect = 7.8 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 412 TMKKNMLTLNTTSLTPWLTDTVATTSLSTSPARRRCARRIH 534 T+ + LT PWL T LST P R R A++IH Sbjct: 78 TLYRRDLTPPEPGFWPWLRHV--PTWLSTVPTRHRLAKKIH 116 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,549,669 Number of Sequences: 37544 Number of extensions: 223094 Number of successful extensions: 772 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 754 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 772 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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