Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0863
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    27   9.2  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    27   9.2  
AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 385 QPTKYLSPATMKKNMLTLNTTSLTPWLTDTVATTSLSTSP 504
           + T   +P T      T  T S T + T T+ TT+ +T+P
Sbjct: 305 ETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTP 344


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 385 QPTKYLS-PATMKKNMLTLNTTSLTPWLTDTVATTSLSTS 501
           +PT   S P T      T  +T+ TP  T T  TTS ST+
Sbjct: 300 EPTTSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTTSASTT 339


>Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical
           protein F18E2.1 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 375 VIAPAHKVLVAGHHEEEYAH-PKYDFAYSVADGHSGDNK 488
           +I+    +++AG+HE++Y +   Y   +SV D    DN+
Sbjct: 175 LISKVPYMVIAGNHEDDYQNFTNYQKRFSVPDNGHNDNQ 213


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 486 KSQHESREATLCTANTPCWKLTAQC 560
           K+ +E R  + CT +  C KL+AQC
Sbjct: 918 KNSNEKRLGSPCTRHEECEKLSAQC 942


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 486 KSQHESREATLCTANTPCWKLTAQC 560
           K+ +E R  + CT +  C KL+AQC
Sbjct: 867 KNSNEKRLGSPCTRHEECEKLSAQC 891


>AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical
          protein Y39B6A.9 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 7  MFAKIVALSIVLAVATAGLLPEPHY 81
          M  +++ LS  + +ATAG  PEP+Y
Sbjct: 1  MTRRVLLLSASVLLATAGYAPEPYY 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,587,184
Number of Sequences: 27780
Number of extensions: 165494
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)