Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.037
UniRef50_Q63V37 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:...    34   3.2  
UniRef50_UPI00006A0566 Cluster: UPI00006A0566 related cluster; n...    33   5.6  
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   7.3  
UniRef50_UPI00005A1247 Cluster: PREDICTED: similar to USP6 N-ter...    32   9.7  
UniRef50_Q2G3U9 Cluster: Putative uncharacterized protein precur...    32   9.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.037
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 337 AGWWYLPVRTHKRSYHQ 387
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q63V37 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia pseudomallei|Rep: Putative uncharacterized
           protein - Burkholderia pseudomallei (Pseudomonas
           pseudomallei)
          Length = 72

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 204 VTGAHRHLKRKCTTTLRISSKVSVSYNGRPALQTETHYCFTVQ 332
           V+GAHR  +R C+  +   ++V+   NGR  L++  H   T+Q
Sbjct: 26  VSGAHRVARRACSHAMASLTQVNAGVNGRHRLESSLHAFATIQ 68


>UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:
           ENBP1 protein - Medicago truncatula (Barrel medic)
          Length = 1701

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 427 NKNQIRKIIICVITGGRTSCESARVGTTTRPICTVK 320
           +KN+I+K  + ++T G T C SA VGTT   + T K
Sbjct: 317 SKNKIKKKEVDLVTNGETVCGSANVGTTVEILETEK 352


>UniRef50_UPI00006A0566 Cluster: UPI00006A0566 related cluster;
           n=76; Xenopus tropicalis|Rep: UPI00006A0566 UniRef100
           entry - Xenopus tropicalis
          Length = 877

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 143 LCANRTGYFFYCLTVYLVLSGYWS 214
           LC   +G+FF+C+  Y+VL GYW+
Sbjct: 745 LCNEGSGFFFFCIIGYIVL-GYWA 767


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 290 PRPSNRNALLLHGTNRPGGGTYPCGLTRG 376
           PRP  R A    GT R GGGT P G +RG
Sbjct: 193 PRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


>UniRef50_UPI00005A1247 Cluster: PREDICTED: similar to USP6
           N-terminal like protein (Related to the N terminus of
           tre) (RN-tre); n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like protein
           (Related to the N terminus of tre) (RN-tre) - Canis
           familiaris
          Length = 502

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 254 NKFEGLS*LQRPPRPSNRNALLLHGTNRPGGGTYPCGLTRGP 379
           +  +G   L  PPRPS R  + L    RP G   P  L RGP
Sbjct: 18  SSLQGTCCLPGPPRPSERGHVRLTCDPRPRGCRPPAALARGP 59


>UniRef50_Q2G3U9 Cluster: Putative uncharacterized protein
           precursor; n=1; Novosphingobium aromaticivorans DSM
           12444|Rep: Putative uncharacterized protein precursor -
           Novosphingobium aromaticivorans (strain DSM 12444)
          Length = 260

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -1

Query: 341 PAYLYREAVMRFGLKGGAAVVTN*DLRTYSQSGGAFAF*MSMGSSN 204
           PA+   EA   F + G  A VT+   R  S SGG FA   S+G S+
Sbjct: 35  PAFAQEEAASDFTVTGNVAAVTDYRFRGISLSGGDFAVQGSIGVSH 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,498,110
Number of Sequences: 1657284
Number of extensions: 12907312
Number of successful extensions: 27224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27220
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)