Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.1  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   6.7  

>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 615 NATSVTFISCSCRRSLKDKTSGAIVSSDRTLFESCS 508
           +   VT I+ S  +S K   +  ++S    LFESC+
Sbjct: 24  SVVDVTMINISLYKSYKSYPTNKVLSELAALFESCN 59


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 329 TNRPGGGTYPCGLTRGPTTSNYANYN 406
           +N P    YP    R P+   Y+NY+
Sbjct: 306 SNHPHSSNYPSSSRRKPSPDRYSNYS 331


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/63 (19%), Positives = 27/63 (42%)
 Frame = +3

Query: 192 WC*VVTGAHRHLKRKCTTTLRISSKVSVSYNGRPALQTETHYCFTVQIGRVVVPTRADSQ 371
           W  ++TG  + +  + +     S    V   G+P L     +   ++  R +VP   + Q
Sbjct: 28  WGIILTGIEKDVSERLSKLASTSKDSEVVAQGKPLLNDLEAFKSDIKNDRPLVPLEGEGQ 87

Query: 372 EVL 380
           +++
Sbjct: 88  DIV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,785
Number of Sequences: 5004
Number of extensions: 54717
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)