Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0646 + 24710348-24711838                                         29   2.3  
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655...    29   2.3  
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    28   5.2  
07_01_0240 - 1749674-1750514,1751157-1752040                           28   5.2  

>02_04_0646 + 24710348-24711838
          Length = 496

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 29  HIVIYLMAPSIVH--IIPLYVVLNRLFS*RISADTVLGGGLCANRTGYFFY 175
           HIV+ L+  + V   + PL++VLN+L   RISA+  +  G+   R G F Y
Sbjct: 411 HIVVILVIAAWVSFTMAPLFLVLNKLGLLRISAEDEM-AGMDQTRHGGFAY 460


>02_03_0406 +
           18663986-18664059,18665082-18665405,18665499-18665559,
           18666136-18666282,18666368-18666492,18666619-18666648,
           18666689-18666893,18667532-18667741,18667886-18667888,
           18670034-18670942,18671239-18672069
          Length = 972

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 159 VRF-AQSPPPRTVSALIRYENKRFKTTYNGIICTIEGAIK*ITMCS 25
           +RF A+  PP        + N+    T+ GIIC ++GA+  I + S
Sbjct: 399 LRFLAELSPPHDNGLAASWRNRTDCCTWEGIICDVDGAVTKILLAS 444


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/64 (25%), Positives = 37/64 (57%)
 Frame = +2

Query: 413 DLIFITRCYFFTVEVKR*HLLSTYFIRKNWYPLQDSKSVLSLDTIAPDVLSFRLRRQLQE 592
           D +F+ R Y+ ++         T  +++N   +QD + VLS+ T+  D+ SF + +++++
Sbjct: 184 DQLFVARSYYPSIAKLEGQEELTVLMKQN---IQDHERVLSVSTVDADLPSF-INKKMEQ 239

Query: 593 IKVT 604
           ++ T
Sbjct: 240 MEQT 243


>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 405 ILRI*FLLHDVISSPWKSNVNIC 473
           +LR  F    ++++PWK N+N+C
Sbjct: 288 LLRCRFASCKLVNNPWKDNINLC 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,847
Number of Sequences: 37544
Number of extensions: 364445
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)