Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     30   1.8  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               28   7.1  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 436 TSCNKNQIRKIIICVITGGRTSCESARVGTTTRPICTVKQ*C 311
           T C++ + R   IC + GGR  C   R  T  R  CT  Q C
Sbjct: 245 TDCSEVRCRGNSICKVAGGRARCVPLR-ATCKRVKCTPPQTC 285


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 436 TSCNKNQIRKIIICVITGGRTSCESARVGTTTRPICTVKQ*C 311
           T+C+K + R   IC + GGR  C   R  T  +  C   Q C
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR-ATCKQLKCRPNQEC 142


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 179 LTVYLVLSGYWSP*TSKTQMHHH 247
           +T++++++   SP TS +Q HHH
Sbjct: 466 ITIHIIITAPSSPSTSSSQRHHH 488



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 182 TVYLVLSGYWSP*TSKTQMHHH 247
           T++++++   SP TS +Q HHH
Sbjct: 499 TIHIIITAPLSPSTSSSQRHHH 520


>SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
 Frame = -3

Query: 597 FISCSCRRSLKDKTSGAIVSSDRTLFESCSGY----------QFFLMKYVLNKC*RLTST 448
           F+   C + +KDK+ GA++ S R  +E  S Y          + F+M Y+ NKC RL  T
Sbjct: 702 FMRIYCSK-IKDKSQGALMKSHRNNYEILSLYTSGINYVYVTKGFVM-YLGNKCERLCGT 759

Query: 447 VKK*HRVIKI 418
           + +  +  +I
Sbjct: 760 IMQKFQTYRI 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,847,678
Number of Sequences: 59808
Number of extensions: 410531
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)