Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   4.7  
Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical p...    28   6.2  
AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic gl...    28   6.2  
U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    27   8.2  
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    27   8.2  
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    27   8.2  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 206 YWSP*TSKTQMHHHFENKFEGLS*LQRPPRPSNR 307
           Y+S  T+ T+ HHH  ++   L+  Q  PRPS+R
Sbjct: 233 YYSQ-TNLTESHHHQSSQETSLNPQQMHPRPSDR 265


>Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 558 TSGAIVSSDRTLFESCSGYQFFLMKYVLN 472
           T GA V  +RTL + CSGY   L+  + N
Sbjct: 331 TDGAGVKKNRTLLKCCSGYCVDLLNKLAN 359


>Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 558 TSGAIVSSDRTLFESCSGYQFFLMKYVLN 472
           T GA V  +RTL + CSGY   L+  + N
Sbjct: 331 TDGAGVKKNRTLLKCCSGYCVDLLNKLAN 359


>AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic
           glutamate receptor NMR-2 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 558 TSGAIVSSDRTLFESCSGYQFFLMKYVLN 472
           T GA V  +RTL + CSGY   L+  + N
Sbjct: 38  TDGAGVKKNRTLLKCCSGYCVDLLNKLAN 66


>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 8   LTTGADEHIVIYLMAPSIVHIIPL 79
           LT G +EHI + + A  + H++PL
Sbjct: 262 LTDGGNEHIQMVIEAQVVTHLVPL 285


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 8   LTTGADEHIVIYLMAPSIVHIIPL 79
           LT G +EHI + + A  + H++PL
Sbjct: 262 LTDGGNEHIQMVIEAQVVTHLVPL 285


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 8   LTTGADEHIVIYLMAPSIVHIIPL 79
           LT G +EHI + + A  + H++PL
Sbjct: 171 LTDGGNEHIQMVIEAQVVTHLVPL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,720
Number of Sequences: 27780
Number of extensions: 320025
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)