Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 430 CNKNQIRKIIICVITGGRTSCESARVGTTTR 338
           CNK  +RK+I  V+ G  +S  S +V    R
Sbjct: 203 CNKTAVRKVISGVV-GAASSVTSIQVANLLR 232


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 585 SCRRSLK-DKTSGAIVSSDRTLFESCSGYQFFL 490
           S + +LK DK S    + +    E+C+GYQ +L
Sbjct: 143 SYKSNLKCDKCSTYQSNGEEVCLENCTGYQQYL 175


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 127 SSWWWTLRKSNWIF 168
           + WWW ++ SN  F
Sbjct: 364 NKWWWNMKISNLSF 377


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 258 SSKVSVSYNGRPALQTETHYCF 323
           S++ ++  N    L  ETH CF
Sbjct: 373 SNEETIDINNGAELMQETHVCF 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,365
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)