Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0862
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   3.3  
At1g13550.1 68414.m01588 expressed protein  ; expression support...    29   3.3  
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro...    28   5.8  
At2g39350.1 68415.m04830 ABC transporter family protein                28   5.8  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    27   7.7  
At3g16850.1 68416.m02151 glycoside hydrolase family 28 protein /...    27   7.7  

>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 356  GRYHHPAYL---YREAVMRFGLKGGAAVVTN*DLRTYS 252
            GRY HPAY    YRE + R  L    + V   +L T S
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAVNEKNLNTGS 1748


>At1g13550.1 68414.m01588 expressed protein  ; expression supported
           by MPSS
          Length = 394

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 428 TRCYFFTVEVKR*HLLSTYFIRKNWYPLQDSKSVLSLDTIAPDV--LSFRLRRQLQEIKV 601
           +RCY+F   V    LL  + +R+ W  +++S S L    +  D   L+  LR +L  + +
Sbjct: 162 SRCYYFAKPVAPNALLPAFLMRQGW-TIENSTSTLQDFGLIDDAKGLNLELRSKLPGLDI 220

Query: 602 TEV 610
           + V
Sbjct: 221 SVV 223


>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 4 (SAC4)  GI:31415724
          Length = 831

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 158 TGYFFYCLTVYLVLSGYWSP*TS--KTQMHHHFENKFEGLS*LQRPPRPSNRNA 313
           TG+F+Y LT  + L GY S  +S   T  H+  ++       L++  RPS   A
Sbjct: 417 TGFFYYQLTPAMKLEGYMSLSSSDADTSPHNSSDDDSRDYDSLEKNCRPSKNVA 470


>At2g39350.1 68415.m04830 ABC transporter family protein 
          Length = 740

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 41  YLMAPSIVHIIPLYVVLNRLFS*RISADTVLGGGLCANRTGYFFYCLTVYLVLSGYWS 214
           Y+++ +IV   P  + L+  F+    A T    GL    TG  FYCL   ++L+ +WS
Sbjct: 528 YVLSHAIVSF-PSLIFLSVAFA----ATTYWAVGLDGGLTGLLFYCL---IILASFWS 577


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 287 PPRPSNRNALLLHGTNRPGGGTYPCGLTRGPTT 385
           PPRP N N  L+  T  P   T    +T    T
Sbjct: 37  PPRPENPNPFLVPPTTVPAAATVAAAVTENAAT 69


>At3g16850.1 68416.m02151 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P05117 Polygalacturonase 2A precursor
           (EC 3.2.1.15)  (Pectinase) {Lycopersicon esculentum};
           contains PF00295: Glycosyl hydrolases family 28
          Length = 455

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 270 SVSYNGRPALQTETHYCFTVQIGRVVVPTRADSQEVL 380
           ++++   PA+     YC  + I +V++ T  DS  VL
Sbjct: 191 NLTFLNAPAINIHPVYCSQIHIRKVLIETSVDSPHVL 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,376
Number of Sequences: 28952
Number of extensions: 287833
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)