Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0860
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   1.8  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   3.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.2  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    26   5.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.4  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 641 LPLKGELDEENEY*SGMKNSRSVLGRKEPNSY 546
           + +KG +  +NEY S  KN  ++LG  +P+ +
Sbjct: 242 MEVKGRVCTQNEYKSDPKNQYNILGAPKPHVF 273


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 423 VLTTSRSLTYFFNRYFGYRRPFFNNDQF 340
           V+++  SL   FNR+F Y   F N++ F
Sbjct: 59  VVSSINSLEKHFNRHFNYPYTFLNDEPF 86


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 384 RYFGYRRPFFNNDQFYVTFCQFKNIS 307
           R F Y + + N D FY+TF  ++  S
Sbjct: 299 RKFLYEKIYMNKDGFYITFNNYREAS 324


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 423 VLTTSRSLTYFFNRYFGYRRPFFNNDQFYVTF 328
           VL++  S+   FNR+F Y   F N++ F   F
Sbjct: 117 VLSSMNSIERRFNRHFKYPYVFLNDEPFTTEF 148


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 191 KLINANNAEFSRDPDDDSNNLNLHCYAHIQTYIQKYRLKLMFL 319
           KL+  +  E    P D S     H   H+  Y  ++R +LMFL
Sbjct: 48  KLVLYDTKEDVLSPHDASVLAVAHSTGHVSFYRHQFRAELMFL 90


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 299 DIFVCKFECVRNSANLNYSNHHLDLWRIRR 210
           D  VC++E   N  + +  NHH D W +R+
Sbjct: 360 DRLVCRYENRYNKLHASEYNHHHD-WAVRQ 388


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 423 VLTTSRSLTYFFNRYFGYRRPFFNNDQF 340
           VL T RS+   FN+ F Y   F+  D+F
Sbjct: 16  VLRTMRSVEDRFNKRFHYPWTFYGMDEF 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,150
Number of Sequences: 5004
Number of extensions: 55795
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)